Variant report

Variant	rs6850423
Chromosome Location	chr4:144161489-144161490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11933189	0.90[AFR][1000 genomes]
rs11941742	0.90[AFR][1000 genomes]
rs13105227	0.88[AFR][1000 genomes]
rs13113118	0.90[AFR][1000 genomes]
rs13131510	0.90[AFR][1000 genomes]
rs13140326	0.90[AFR][1000 genomes]
rs13145081	0.90[AFR][1000 genomes]
rs17017424	0.88[AFR][1000 genomes]
rs300932	0.88[AFR][1000 genomes]
rs300933	0.88[AFR][1000 genomes]
rs300937	0.87[AFR][1000 genomes]
rs34461753	0.90[AFR][1000 genomes]
rs34474130	0.91[AFR][1000 genomes]
rs35143494	0.90[AFR][1000 genomes]
rs35416586	0.85[AFR][1000 genomes]
rs35887480	0.80[AFR][1000 genomes]
rs4554015	0.90[AFR][1000 genomes]
rs603861	0.88[AFR][1000 genomes]
rs603934	0.88[AFR][1000 genomes]
rs604746	0.88[AFR][1000 genomes]
rs6834491	0.90[AFR][1000 genomes]
rs6842633	0.91[AFR][1000 genomes]
rs6853356	0.90[AFR][1000 genomes]
rs71610428	0.88[AFR][1000 genomes]
rs71610429	0.90[AFR][1000 genomes]
rs7655033	0.90[AFR][1000 genomes]
rs7670050	0.90[AFR][1000 genomes]
rs7670426	0.90[AFR][1000 genomes]
rs7674403	0.91[AFR][1000 genomes]
rs7686023	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144153800-144161800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:144156200-144172600	Weak transcription	Right Atrium	heart
3	chr4:144156600-144162400	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:144160800-144162800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:144160800-144163600	Enhancers	Fetal Intestine Small	intestine
6	chr4:144161400-144163600	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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