Variant report

Variant	rs6850492
Chromosome Location	chr4:142637305-142637306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:142295670..142297489-chr4:142636919..142639486,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10003233	0.98[ASN][1000 genomes]
rs10033884	0.98[ASN][1000 genomes]
rs10519610	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10833	0.88[CHB][hapmap];0.88[CHD][hapmap];1.00[ASN][1000 genomes]
rs12498901	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12504148	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12510514	1.00[JPT][hapmap]
rs1519553	0.83[GIH][hapmap]
rs1607595	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17007561	0.98[ASN][1000 genomes]
rs17364630	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2131413	0.98[ASN][1000 genomes]
rs2131414	0.98[ASN][1000 genomes]
rs2131415	0.98[ASN][1000 genomes]
rs3113914	0.98[ASN][1000 genomes]
rs4956404	0.83[GIH][hapmap]
rs4956405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55706905	0.98[ASN][1000 genomes]
rs56082300	0.98[ASN][1000 genomes]
rs56129444	0.98[ASN][1000 genomes]
rs56305248	0.87[ASN][1000 genomes]
rs56332929	0.98[ASN][1000 genomes]
rs56761520	0.93[ASN][1000 genomes]
rs6827248	0.98[ASN][1000 genomes]
rs6841454	0.83[GIH][hapmap]
rs6842735	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs72712404	0.98[ASN][1000 genomes]
rs72712412	0.98[ASN][1000 genomes]
rs72712413	0.98[ASN][1000 genomes]
rs72712415	0.98[ASN][1000 genomes]
rs72712416	0.98[ASN][1000 genomes]
rs72712417	0.98[ASN][1000 genomes]
rs72712418	0.98[ASN][1000 genomes]
rs72712421	0.98[ASN][1000 genomes]
rs72712423	0.98[ASN][1000 genomes]
rs72712425	0.98[ASN][1000 genomes]
rs72712427	0.98[ASN][1000 genomes]
rs72712428	0.98[ASN][1000 genomes]
rs72712434	0.98[ASN][1000 genomes]
rs72712436	0.98[ASN][1000 genomes]
rs72712438	0.98[ASN][1000 genomes]
rs72712443	0.98[ASN][1000 genomes]
rs72712444	0.98[ASN][1000 genomes]
rs72712445	0.98[ASN][1000 genomes]
rs72712448	0.98[ASN][1000 genomes]
rs72712452	0.98[ASN][1000 genomes]
rs7349640	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7440292	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668411	0.98[ASN][1000 genomes]
rs7668761	0.80[ASN][1000 genomes]
rs7671458	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7688025	0.98[ASN][1000 genomes]
rs7688250	0.83[GIH][hapmap]
rs7688999	0.98[ASN][1000 genomes]
rs7694632	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880173	chr4:142355535-142666106	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3401979	chr4:142434442-142803321	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018949	chr4:142451823-142732365	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1030822	chr4:142487721-142706053	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1027004	chr4:142487721-143007320	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv3448093	chr4:142612197-142704695	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6850492	IL15	cis	multi-tissue	Pritchard

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142608800-142655000	Weak transcription	Gastric	stomach
2	chr4:142624000-142652000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr4:142624200-142651000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:142629400-142651000	Weak transcription	Left Ventricle	heart
5	chr4:142629400-142654600	Weak transcription	Esophagus	oesophagus
6	chr4:142629400-142655000	Weak transcription	Spleen	Spleen
7	chr4:142629600-142637600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr4:142629600-142657600	Weak transcription	Right Ventricle	heart
9	chr4:142629800-142637400	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr4:142630000-142638600	Weak transcription	Aorta	Aorta
11	chr4:142630000-142650400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr4:142630200-142637800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:142631800-142637600	Weak transcription	GM12878-XiMat	blood
14	chr4:142634600-142653600	Weak transcription	Colon Smooth Muscle	Colon
15	chr4:142634800-142641600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:142634800-142656200	Weak transcription	Pancreas	Pancrea
17	chr4:142635800-142651600	Weak transcription	NHDF-Ad	bronchial
18	chr4:142635800-142651800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:142635800-142651800	Weak transcription	HSMM	muscle
20	chr4:142635800-142651800	Weak transcription	NHLF	lung
21	chr4:142635800-142651800	Weak transcription	Osteobl	bone
22	chr4:142635800-142653600	Weak transcription	HSMMtube	muscle
23	chr4:142636000-142642200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr4:142636200-142637600	Weak transcription	Ovary	ovary
25	chr4:142636200-142642200	Weak transcription	A549	lung
26	chr4:142636200-142642800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr4:142636200-142647200	Weak transcription	Hela-S3	cervix
28	chr4:142637200-142638000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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