Variant report

Variant	rs6852412
Chromosome Location	chr4:143795347-143795348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143795116..143796880-chr4:143868819..143870461,2	MCF-7	breast:

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10004713	0.89[EUR][1000 genomes]
rs10014390	0.90[EUR][1000 genomes]
rs10017013	0.89[EUR][1000 genomes]
rs10017804	0.89[EUR][1000 genomes]
rs10019031	0.90[EUR][1000 genomes]
rs10028292	0.89[EUR][1000 genomes]
rs10030770	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10033548	0.90[EUR][1000 genomes]
rs10084818	0.89[EUR][1000 genomes]
rs1012011	0.84[EUR][1000 genomes]
rs1012012	0.84[EUR][1000 genomes]
rs11100754	1.00[CHB][hapmap]
rs13112916	0.81[ASN][1000 genomes]
rs13114894	0.89[EUR][1000 genomes]
rs13122950	0.90[EUR][1000 genomes]
rs13126927	0.90[EUR][1000 genomes]
rs13145393	0.89[EUR][1000 genomes]
rs13145724	0.81[ASN][1000 genomes]
rs13147030	0.90[EUR][1000 genomes]
rs13151684	0.89[EUR][1000 genomes]
rs13435685	0.84[EUR][1000 genomes]
rs1372237	0.89[EUR][1000 genomes]
rs1372238	0.93[JPT][hapmap];0.89[EUR][1000 genomes]
rs1372239	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs1373036	0.92[CHB][hapmap]
rs1441414	0.89[EUR][1000 genomes]
rs1441418	1.00[CHB][hapmap]
rs1510139	0.89[EUR][1000 genomes]
rs1605954	0.90[EUR][1000 genomes]
rs1605955	0.90[EUR][1000 genomes]
rs17016873	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1876938	0.89[EUR][1000 genomes]
rs1876939	1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs1899319	0.89[EUR][1000 genomes]
rs191762	0.84[CHB][hapmap]
rs2003851	0.89[EUR][1000 genomes]
rs2083619	0.89[EUR][1000 genomes]
rs2120843	0.90[EUR][1000 genomes]
rs2120844	0.90[EUR][1000 genomes]
rs2166187	0.90[EUR][1000 genomes]
rs2218240	0.92[CHB][hapmap];0.81[ASN][1000 genomes]
rs2322908	0.90[EUR][1000 genomes]
rs28390284	0.90[EUR][1000 genomes]
rs28404663	0.90[EUR][1000 genomes]
rs28560068	0.89[EUR][1000 genomes]
rs28689569	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28693771	0.89[EUR][1000 genomes]
rs2874907	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28749775	0.90[EUR][1000 genomes]
rs28789215	0.89[EUR][1000 genomes]
rs28814581	0.90[EUR][1000 genomes]
rs28814625	0.90[EUR][1000 genomes]
rs28849788	0.90[EUR][1000 genomes]
rs28854016	0.90[EUR][1000 genomes]
rs34499804	0.84[EUR][1000 genomes]
rs34959108	0.90[EUR][1000 genomes]
rs35582432	0.89[EUR][1000 genomes]
rs4575951	0.81[ASN][1000 genomes]
rs4690698	0.84[CHB][hapmap]
rs4690699	0.92[CHB][hapmap]
rs4690706	0.90[EUR][1000 genomes]
rs4690708	0.90[EUR][1000 genomes]
rs4690709	0.90[EUR][1000 genomes]
rs4690728	0.92[CHB][hapmap];0.81[ASN][1000 genomes]
rs4690730	0.84[CHB][hapmap]
rs4690733	0.90[EUR][1000 genomes]
rs4690734	0.90[EUR][1000 genomes]
rs4690735	0.90[EUR][1000 genomes]
rs4690736	0.89[EUR][1000 genomes]
rs62330374	0.89[EUR][1000 genomes]
rs6537124	0.92[CHB][hapmap]
rs6537130	0.81[ASN][1000 genomes]
rs6537135	0.90[EUR][1000 genomes]
rs6537136	0.89[EUR][1000 genomes]
rs6811022	0.92[CHB][hapmap]
rs6818484	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6824743	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826496	0.89[EUR][1000 genomes]
rs6833501	0.92[EUR][1000 genomes]
rs6834625	0.83[EUR][1000 genomes]
rs6840593	0.87[EUR][1000 genomes]
rs6844759	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6847097	0.89[EUR][1000 genomes]
rs6849626	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6850278	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6852570	0.92[CHB][hapmap]
rs716878	0.89[EUR][1000 genomes]
rs732600	0.89[EUR][1000 genomes]
rs732601	0.89[EUR][1000 genomes]
rs7670139	0.81[ASN][1000 genomes]
rs7683234	0.90[EUR][1000 genomes]
rs7683364	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7683834	0.90[EUR][1000 genomes]
rs7683962	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7688031	0.90[EUR][1000 genomes]
rs7699632	0.89[EUR][1000 genomes]
rs877032	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9308153	0.90[EUR][1000 genomes]
rs9308154	0.89[EUR][1000 genomes]
rs9683718	0.90[EUR][1000 genomes]
rs9994364	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv880175	chr4:143779613-143892252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033772	chr4:143788043-143800961	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1019095	chr4:143788043-143801270	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1021242	chr4:143788460-143801084	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv437434	chr4:143788564-143801347	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv2760829	chr4:143793939-143801096	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv2422175	chr4:143794072-143800973	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3467402	chr4:143794085-143801152	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv10580	chr4:143794158-143856359	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv3467403	chr4:143794229-143801010	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv18685	chr4:143794391-143800941	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3692841	chr4:143795347-143800361	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143795000-143796600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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