Variant report

Variant	rs6855617
Chromosome Location	chr4:166112467-166112468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11939254	0.82[AFR][1000 genomes]
rs17045896	1.00[MEX][hapmap]
rs17046047	1.00[MEX][hapmap]
rs4132379	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55891822	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56080556	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58834146	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6536898	1.00[TSI][hapmap]
rs6842875	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73871596	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73871598	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73871599	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7657437	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv533191	chr4:165879671-166171638	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv881168	chr4:165975122-166196438	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166110800-166114800	Enhancers	Liver	Liver
2	chr4:166111400-166112800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:166111400-166114400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr4:166111600-166112600	Enhancers	HepG2	liver
5	chr4:166111600-166113200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:166111800-166112600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:166112000-166112600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:166112000-166112600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr4:166112200-166112800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr4:166112400-166112600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:166112400-166112600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr4:166112400-166112600	Enhancers	Fetal Brain Female	brain
13	chr4:166112400-166112800	Enhancers	Fetal Stomach	stomach
14	chr4:166112400-166112800	Enhancers	HSMMtube	muscle
15	chr4:166112400-166114000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr4:166112400-166114000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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