Variant report

Variant	rs6855627
Chromosome Location	chr4:87898302-87898303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:87887515..87891253-chr4:87896887..87898835,3	MCF-7	breast:
2	chr4:87896820..87899723-chr4:87926521..87929055,5	K562	blood:
3	chr4:87894083..87901163-chr4:87926378..87930735,13	K562	blood:
4	chr4:87895920..87900923-chr4:87925411..87930708,9	MCF-7	breast:
5	chr4:87892815..87895496-chr4:87897060..87900132,4	MCF-7	breast:
6	chr4:87894580..87900721-chr4:87926553..87929375,8	MCF-7	breast:
7	chr4:87897075..87899882-chr4:87931733..87933801,2	K562	blood:
8	chr4:87854810..87857706-chr4:87898102..87901903,3	MCF-7	breast:
9	chr4:87897462..87900322-chr4:87922255..87924346,2	K562	blood:
10	chr4:87855124..87856769-chr4:87897748..87900554,2	MCF-7	breast:
11	chr4:87891928..87895544-chr4:87897508..87902479,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000172493	Chromatin interaction
ENSG00000163633	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11931688	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11933026	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11933097	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11933302	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11936587	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17012279	1.00[CEU][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs28372291	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28544381	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs340647	1.00[CEU][hapmap]
rs340652	1.00[CEU][hapmap]
rs3775216	1.00[MEX][hapmap]
rs56800179	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57785643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58016426	0.88[EUR][1000 genomes]
rs59030024	1.00[EUR][1000 genomes]
rs59188173	0.88[EUR][1000 genomes]
rs59830245	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61009470	0.88[EUR][1000 genomes]
rs6821413	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6822432	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6824639	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6834549	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6851332	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7659244	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7680465	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7682510	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009937	chr4:87795314-88008345	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv999176	chr4:87869996-88098136	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv998335	chr4:87869996-88104414	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1001017	chr4:87872160-88087003	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv537166	chr4:87872160-88087003	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87872600-87926200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr4:87882400-87898600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:87882600-87920200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:87882800-87912400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:87886600-87898600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:87888800-87898800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr4:87890200-87898600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr4:87892000-87900400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr4:87892200-87907000	Weak transcription	Brain Anterior Caudate	brain
10	chr4:87892400-87920600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:87892600-87898400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:87892800-87898600	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:87892800-87909400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:87893200-87900200	Weak transcription	Esophagus	oesophagus
15	chr4:87894200-87899000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr4:87894400-87898400	Weak transcription	Osteobl	bone
17	chr4:87894400-87898600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr4:87894400-87898600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr4:87894400-87911000	Weak transcription	Pancreas	Pancrea
20	chr4:87894600-87898400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:87894600-87898600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:87894600-87898600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:87894600-87898600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:87894600-87898600	Weak transcription	Left Ventricle	heart
25	chr4:87894600-87898600	Weak transcription	Ovary	ovary
26	chr4:87894600-87898600	Weak transcription	Right Atrium	heart
27	chr4:87894600-87898800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr4:87894600-87898800	Weak transcription	Spleen	Spleen
29	chr4:87894600-87899000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr4:87894600-87904200	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr4:87894600-87915600	Weak transcription	Lung	lung
32	chr4:87894600-87921000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr4:87894800-87898800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:87895000-87898400	Weak transcription	Colon Smooth Muscle	Colon
35	chr4:87895200-87898800	Weak transcription	Gastric	stomach
36	chr4:87895200-87909400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr4:87895400-87898600	Weak transcription	K562	blood
38	chr4:87895400-87920000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr4:87895600-87898400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr4:87895600-87898400	Weak transcription	Fetal Thymus	thymus
41	chr4:87895600-87898600	Enhancers	HepG2	liver
42	chr4:87895800-87899800	Weak transcription	Primary B cells from cord blood	blood
43	chr4:87896000-87898600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr4:87896200-87898400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr4:87896200-87898400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:87896200-87898600	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr4:87896200-87902800	Weak transcription	Primary T cells from cord blood	blood
48	chr4:87896200-87916000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr4:87896200-87919200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr4:87896400-87898400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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