Variant report

Variant	rs6855921
Chromosome Location	chr4:80153510-80153511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:80131254..80134006-chr4:80152000..80154317,2	K562	blood:
2	chr4:80148564..80150117-chr4:80152749..80155436,2	K562	blood:
3	chr4:80148564..80151434-chr4:80151473..80154249,2	K562	blood:
4	chr4:80152607..80154450-chr4:80154654..80156454,2	K562	blood:

Variant related genes	Relation type
ENSG00000249307	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10013555	0.93[ASN][1000 genomes]
rs10032360	0.95[ASN][1000 genomes]
rs10032363	0.95[ASN][1000 genomes]
rs1026394	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1080690	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11098588	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11098595	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098603	0.95[ASN][1000 genomes]
rs11098609	0.83[ASN][1000 genomes]
rs11732616	0.95[ASN][1000 genomes]
rs11735553	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12502459	0.95[ASN][1000 genomes]
rs12504676	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12643994	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12644018	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12648205	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12650537	0.89[ASN][1000 genomes]
rs13143413	0.93[ASN][1000 genomes]
rs13145326	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1385055	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1455313	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1840480	0.91[ASN][1000 genomes]
rs1955232	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28528138	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4246718	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4302482	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4385093	0.95[ASN][1000 genomes]
rs4386626	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4425403	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4470657	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4502706	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4519821	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4527507	0.89[ASN][1000 genomes]
rs4535355	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4535356	0.91[ASN][1000 genomes]
rs4571359	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4571360	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4639097	0.85[ASN][1000 genomes]
rs4975079	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4975080	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4975166	0.93[ASN][1000 genomes]
rs4975171	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4975172	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4975173	0.95[ASN][1000 genomes]
rs4988619	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56008448	0.89[ASN][1000 genomes]
rs56205707	0.84[ASN][1000 genomes]
rs58479998	0.93[ASN][1000 genomes]
rs6534217	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6534218	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6534222	0.90[ASN][1000 genomes]
rs6534253	0.95[ASN][1000 genomes]
rs6810580	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826553	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6826564	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827253	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6832917	0.95[ASN][1000 genomes]
rs6837864	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853034	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72870807	0.84[ASN][1000 genomes]
rs72870815	0.84[ASN][1000 genomes]
rs72870819	0.84[ASN][1000 genomes]
rs7656444	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659766	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7667438	0.95[ASN][1000 genomes]
rs7673022	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676343	0.93[ASN][1000 genomes]
rs7679438	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694880	0.95[ASN][1000 genomes]
rs7695330	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307489	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9715410	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9993157	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80149800-80153600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:80151600-80154200	Enhancers	K562	blood
3	chr4:80152200-80153600	Weak transcription	Fetal Lung	lung
4	chr4:80153200-80154200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:80153200-80154400	Enhancers	HSMM	muscle
6	chr4:80153400-80154200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:80153400-80154400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:80153400-80156400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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