Variant report

Variant	rs6856475
Chromosome Location	chr4:102056723-102056724
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17030795	0.91[YRI][hapmap]
rs17031040	1.00[ASW][hapmap]
rs7673607	0.82[LWK][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv879672	chr4:101989816-102058842	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1011351	chr4:102056024-102450302	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102026200-102068600	Weak transcription	Primary T cells from cord blood	blood
2	chr4:102046600-102058600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:102046800-102058600	Weak transcription	Gastric	stomach
4	chr4:102048800-102058600	Weak transcription	Aorta	Aorta
5	chr4:102049200-102064800	Weak transcription	HMEC	breast
6	chr4:102050000-102058400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:102050000-102060200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:102050400-102058600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr4:102054400-102057400	Weak transcription	Left Ventricle	heart
10	chr4:102054600-102058400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:102055600-102059000	Enhancers	Primary B cells from peripheral blood	blood
12	chr4:102056200-102056800	Enhancers	Primary B cells from cord blood	blood
13	chr4:102056400-102056800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:102056400-102057000	Active TSS	Liver	Liver
15	chr4:102056400-102057000	Enhancers	Duodenum Mucosa	Duodenum
16	chr4:102056400-102057200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr4:102056400-102057600	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr4:102056400-102057600	Enhancers	Rectal Smooth Muscle	rectum
19	chr4:102056400-102059000	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr4:102056600-102056800	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr4:102056600-102056800	Enhancers	Brain Angular Gyrus	brain
22	chr4:102056600-102056800	Flanking Active TSS	Brain Anterior Caudate	brain
23	chr4:102056600-102056800	Enhancers	Colon Smooth Muscle	Colon
24	chr4:102056600-102056800	Enhancers	Fetal Intestine Small	intestine
25	chr4:102056600-102056800	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr4:102056600-102056800	Enhancers	Small Intestine	intestine
27	chr4:102056600-102056800	Flanking Active TSS	GM12878-XiMat	blood
28	chr4:102056600-102056800	Enhancers	Osteobl	bone
29	chr4:102056600-102057000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:102056600-102057000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr4:102056600-102057000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr4:102056600-102057000	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr4:102056600-102057000	Active TSS	NHDF-Ad	bronchial
34	chr4:102056600-102057200	Active TSS	Brain Hippocampus Middle	brain
35	chr4:102056600-102057200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
36	chr4:102056600-102057200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr4:102056600-102057200	Enhancers	Brain Substantia Nigra	brain
38	chr4:102056600-102057200	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr4:102056600-102057200	Active TSS	Stomach Smooth Muscle	stomach
40	chr4:102056600-102057200	Enhancers	Dnd41	blood
41	chr4:102056600-102057400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr4:102056600-102057400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr4:102056600-102057400	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr4:102056600-102057400	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr4:102056600-102057600	Enhancers	Brain Cingulate Gyrus	brain
46	chr4:102056600-102058000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr4:102056600-102058000	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr4:102056600-102062200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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