Variant report

Variant	rs6858033
Chromosome Location	chr4:48088180-48088181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:48081284..48083247-chr4:48085734..48088525,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000074966	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1396049	1.00[AMR][1000 genomes]
rs16860943	0.83[AMR][1000 genomes]
rs16861067	0.83[AMR][1000 genomes]
rs1979972	0.83[AMR][1000 genomes]
rs2089508	0.83[AMR][1000 genomes]
rs2135957	1.00[AMR][1000 genomes]
rs2251240	0.83[AMR][1000 genomes]
rs2352590	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2352591	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2456926	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2464500	0.83[AMR][1000 genomes]
rs2464501	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2464506	1.00[AMR][1000 genomes]
rs2661522	0.85[AMR][1000 genomes]
rs2661526	0.83[AMR][1000 genomes]
rs2661527	0.83[AMR][1000 genomes]
rs2661531	0.83[AMR][1000 genomes]
rs2661534	0.83[AMR][1000 genomes]
rs2704397	0.83[AMR][1000 genomes]
rs2704398	0.83[AMR][1000 genomes]
rs2704427	0.83[AMR][1000 genomes]
rs2704428	0.83[AMR][1000 genomes]
rs2704429	0.83[AMR][1000 genomes]
rs2704432	0.83[AMR][1000 genomes]
rs2940329	0.83[AMR][1000 genomes]
rs34386002	0.83[AMR][1000 genomes]
rs3857073	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4695333	0.83[AMR][1000 genomes]
rs60470389	0.83[AMR][1000 genomes]
rs7692882	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48067600-48102400	Strong transcription	Primary T helper cells fromperipheralblood	blood
2	chr4:48070800-48105200	Weak transcription	GM12878-XiMat	blood
3	chr4:48076600-48092400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr4:48081600-48094200	Weak transcription	Pancreas	Pancrea
5	chr4:48082400-48088400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr4:48082800-48088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:48082800-48088200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:48083000-48098000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:48083000-48098200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr4:48083400-48098200	Strong transcription	Primary T cells from cord blood	blood
11	chr4:48084400-48098000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr4:48084600-48088600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr4:48084600-48101600	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr4:48085200-48088800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr4:48085200-48089000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr4:48085200-48102400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr4:48086200-48089800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
18	chr4:48086400-48099000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr4:48087400-48088400	Enhancers	Placenta	Placenta
20	chr4:48087400-48088600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr4:48087400-48089200	Enhancers	Hela-S3	cervix
22	chr4:48088000-48088200	ZNF genes & repeats	Aorta	Aorta
23	chr4:48088000-48088600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr4:48088000-48088600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:48088000-48088600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr4:48088000-48088600	Strong transcription	Fetal Thymus	thymus
27	chr4:48088000-48088800	Strong transcription	Primary hematopoietic stem cells	blood
28	chr4:48088000-48088800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood

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