Variant report

Variant	rs6858941
Chromosome Location	chr5:16133072-16133073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11955053	1.00[AMR][1000 genomes]
rs11960118	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2218211	1.00[AMR][1000 genomes]
rs34667413	1.00[AMR][1000 genomes]
rs3849089	0.83[AMR][1000 genomes]
rs3910974	1.00[AMR][1000 genomes]
rs3910975	1.00[AMR][1000 genomes]
rs3910976	1.00[AMR][1000 genomes]
rs3910977	1.00[AMR][1000 genomes]
rs3936412	0.83[AMR][1000 genomes]
rs4624790	1.00[AMR][1000 genomes]
rs4702125	0.83[AMR][1000 genomes]
rs6861604	1.00[AMR][1000 genomes]
rs6878743	1.00[AMR][1000 genomes]
rs6895469	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7723127	1.00[AMR][1000 genomes]
rs7727113	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16128200-16135400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:16132400-16138600	Weak transcription	Right Ventricle	heart
3	chr5:16132600-16133400	Weak transcription	Left Ventricle	heart
4	chr5:16132600-16133800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:16132800-16133200	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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