Variant report
| Variant | rs6859395 |
|---|---|
| Chromosome Location | chr5:97669705-97669706 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr5:97669646-97669715 | MCF10A-Er-Src | breast: | n/a | n/a |
| 2 | FOS | chr5:97669670-97669966 | MCF10A-Er-Src | breast: | n/a | chr5:97669815-97669825 chr5:97669876-97669884 chr5:97669816-97669823 chr5:97669815-97669825 chr5:97669815-97669825 chr5:97669816-97669824 chr5:97669815-97669825 chr5:97669816-97669824 |
| 3 | FOS | chr5:97669671-97669949 | MCF10A-Er-Src | breast: | n/a | chr5:97669815-97669825 chr5:97669876-97669884 chr5:97669816-97669823 chr5:97669815-97669825 chr5:97669815-97669825 chr5:97669816-97669824 chr5:97669815-97669825 chr5:97669816-97669824 |
| 4 | FOS | chr5:97669686-97669959 | MCF10A-Er-Src | breast: | n/a | chr5:97669815-97669825 chr5:97669876-97669884 chr5:97669816-97669823 chr5:97669815-97669825 chr5:97669815-97669825 chr5:97669816-97669824 chr5:97669815-97669825 chr5:97669816-97669824 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000176183 | TF binding region |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10043870 | 1.00[EUR][1000 genomes] |
| rs10057215 | 1.00[EUR][1000 genomes] |
| rs10062168 | 1.00[EUR][1000 genomes] |
| rs10477671 | 1.00[EUR][1000 genomes] |
| rs13360238 | 1.00[EUR][1000 genomes] |
| rs4269306 | 1.00[EUR][1000 genomes] |
| rs60839554 | 1.00[EUR][1000 genomes] |
| rs6868573 | 1.00[EUR][1000 genomes] |
| rs6871563 | 1.00[EUR][1000 genomes] |
| rs6872658 | 1.00[EUR][1000 genomes] |
| rs6877771 | 1.00[EUR][1000 genomes] |
| rs73151326 | 1.00[EUR][1000 genomes] |
| rs73151330 | 1.00[EUR][1000 genomes] |
| rs73155402 | 1.00[EUR][1000 genomes] |
| rs73157304 | 1.00[EUR][1000 genomes] |
| rs73157315 | 1.00[EUR][1000 genomes] |
| rs73159254 | 1.00[EUR][1000 genomes] |
| rs73772968 | 1.00[EUR][1000 genomes] |
| rs73772970 | 1.00[EUR][1000 genomes] |
| rs73775158 | 1.00[EUR][1000 genomes] |
| rs73775162 | 1.00[EUR][1000 genomes] |
| rs7726347 | 1.00[EUR][1000 genomes] |
| rs9326840 | 1.00[EUR][1000 genomes] |
| rs9764305 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882407 | chr5:97553255-97783046 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv882408 | chr5:97616089-97836794 | Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv830419 | chr5:97653713-97829079 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 4 | esv1831511 | chr5:97666860-97678414 | Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:97660000-97669800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr5:97669400-97670200 | Enhancers | NHDF-Ad | bronchial |
| 3 | chr5:97669600-97670400 | Strong transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
