Variant report

Variant	rs6860932
Chromosome Location	chr5:97841989-97841990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1318105	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2086144	0.97[ASN][1000 genomes]
rs2098660	1.00[ASN][1000 genomes]
rs891057	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv328931	chr5:97837626-97844231	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6860932	ARSK	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97838000-97844400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:97839200-97845400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:97839600-97845000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:97839800-97844600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:97839800-97845000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:97839800-97845000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:97839800-97845800	Weak transcription	Pancreas	Pancrea
8	chr5:97840200-97845200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr5:97840400-97844400	Weak transcription	Fetal Intestine Small	intestine
10	chr5:97840800-97843000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:97841000-97845000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr5:97841000-97845000	Weak transcription	Stomach Mucosa	stomach
13	chr5:97841400-97843600	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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