Variant report

Variant	rs686202
Chromosome Location	chr6:56280926-56280927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs635177	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs645774	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs648096	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs650938	0.83[AMR][1000 genomes]
rs653872	1.00[ASN][1000 genomes]
rs664992	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679020	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1022577	chr6:56263674-56289698	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56253000-56282600	Weak transcription	Aorta	Aorta
2	chr6:56271400-56284000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:56279600-56281000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:56280400-56282800	Enhancers	HepG2	liver
5	chr6:56280600-56281000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:56280600-56281000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:56280600-56281000	Enhancers	Fetal Lung	lung
8	chr6:56280600-56281000	Enhancers	Ovary	ovary
9	chr6:56280600-56281000	Enhancers	NH-A	brain
10	chr6:56280600-56281200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:56280600-56281400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:56280600-56281400	Enhancers	Fetal Stomach	stomach
13	chr6:56280600-56281400	Enhancers	HSMM	muscle
14	chr6:56280800-56281000	Flanking Active TSS	NHDF-Ad	bronchial
15	chr6:56280800-56281000	Enhancers	NHLF	lung
16	chr6:56280800-56281200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:56280800-56281200	Flanking Active TSS	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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