Variant report

Variant	rs6864450
Chromosome Location	chr5:61591453-61591454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:61581120..61583166-chr5:61590441..61591948,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10079409	0.88[ASN][1000 genomes]
rs1025032	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10471542	0.88[ASN][1000 genomes]
rs1054897	0.87[ASN][1000 genomes]
rs10939936	0.90[ASN][1000 genomes]
rs10939938	0.88[ASN][1000 genomes]
rs12153750	0.90[ASN][1000 genomes]
rs12519766	0.88[ASN][1000 genomes]
rs12658256	0.87[ASN][1000 genomes]
rs16890656	0.90[ASN][1000 genomes]
rs1808400	0.88[ASN][1000 genomes]
rs1848504	0.94[ASN][1000 genomes]
rs2063256	0.85[ASN][1000 genomes]
rs2272290	0.84[ASN][1000 genomes]
rs2463078	0.88[ASN][1000 genomes]
rs264522	0.90[ASN][1000 genomes]
rs264525	0.89[ASN][1000 genomes]
rs264526	0.90[ASN][1000 genomes]
rs264529	0.92[ASN][1000 genomes]
rs28720674	0.88[ASN][1000 genomes]
rs37032	0.87[ASN][1000 genomes]
rs3842912	0.88[ASN][1000 genomes]
rs3857259	0.93[ASN][1000 genomes]
rs3892140	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4700491	0.88[ASN][1000 genomes]
rs6863617	0.88[ASN][1000 genomes]
rs6872078	0.92[ASN][1000 genomes]
rs6884054	0.93[ASN][1000 genomes]
rs73104056	0.88[ASN][1000 genomes]
rs73104058	0.88[ASN][1000 genomes]
rs7729719	0.88[ASN][1000 genomes]
rs7734679	0.93[ASN][1000 genomes]
rs9291759	0.92[ASN][1000 genomes]
rs9981	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024090	chr5:61258759-61921150	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv2757996	chr5:61403138-61687817	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2759345	chr5:61403138-61748912	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv830318	chr5:61415713-61623320	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1020255	chr5:61451792-62031365	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv1027539	chr5:61457762-62000008	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	esv2755585	chr5:61535831-61618595	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
8	nsv881726	chr5:61556730-61676911	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
9	nsv881727	chr5:61578041-61700970	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61582800-61592600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:61583400-61592600	Weak transcription	Primary T cells from cord blood	blood
3	chr5:61588200-61591800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:61588200-61592000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr5:61588400-61592200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr5:61588800-61591800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr5:61589000-61591600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr5:61589000-61591800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr5:61589000-61592000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr5:61589000-61592000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr5:61589000-61592800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr5:61589200-61592600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr5:61589800-61591800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr5:61589800-61591800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr5:61591400-61597200	Enhancers	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links