Variant report

Variant	rs6865346
Chromosome Location	chr5:74372698-74372699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12109939	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16872433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16872437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872461	1.00[MEX][hapmap];0.89[YRI][hapmap]
rs1992589	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59620469	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61223734	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61406519	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61434572	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6865362	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6866810	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879223	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73114817	0.85[AMR][1000 genomes]
rs73116844	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73127364	0.85[AMR][1000 genomes]
rs73129036	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73131027	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74363600-74373000	Weak transcription	Thymus	Thymus
2	chr5:74368800-74377400	Weak transcription	Hela-S3	cervix
3	chr5:74370800-74377200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr5:74371000-74375200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr5:74371400-74374800	Enhancers	Fetal Thymus	thymus
6	chr5:74371400-74375000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr5:74371600-74373200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr5:74371800-74373000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr5:74372200-74372800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:74372400-74374000	Weak transcription	Primary T cells from cord blood	blood
11	chr5:74372400-74375200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr5:74372600-74377000	Weak transcription	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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