Variant report

Variant	rs6865707
Chromosome Location	chr5:59637306-59637307
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4547892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6865762	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs73106775	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7707365	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59625200-59646800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59635200-59637400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:59635200-59638600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:59635400-59637400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr5:59635800-59637600	Enhancers	GM12878-XiMat	blood
6	chr5:59635800-59639200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:59636000-59637400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:59636000-59637400	Enhancers	Brain Hippocampus Middle	brain
9	chr5:59636000-59637400	Enhancers	Fetal Brain Female	brain
10	chr5:59636000-59637800	Enhancers	Fetal Brain Male	brain
11	chr5:59636600-59637400	Enhancers	NHDF-Ad	bronchial
12	chr5:59636600-59637800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:59637000-59637600	Enhancers	Stomach Smooth Muscle	stomach
14	chr5:59637200-59637400	Enhancers	Colon Smooth Muscle	Colon
15	chr5:59637200-59637400	Enhancers	Rectal Smooth Muscle	rectum
16	chr5:59637200-59637800	Enhancers	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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