Variant report
| Variant | rs6868573 |
|---|---|
| Chromosome Location | chr5:97616129-97616130 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:97615949..97618290-chr5:97620124..97621957,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10043870 | 1.00[EUR][1000 genomes] |
| rs10057215 | 1.00[EUR][1000 genomes] |
| rs10062168 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10477671 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13360238 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4269306 | 1.00[EUR][1000 genomes] |
| rs60839554 | 1.00[EUR][1000 genomes] |
| rs6859395 | 1.00[EUR][1000 genomes] |
| rs6871563 | 1.00[EUR][1000 genomes] |
| rs6872658 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6877771 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73151326 | 1.00[EUR][1000 genomes] |
| rs73151330 | 1.00[EUR][1000 genomes] |
| rs73155402 | 1.00[EUR][1000 genomes] |
| rs73157304 | 1.00[EUR][1000 genomes] |
| rs73157315 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73159254 | 1.00[EUR][1000 genomes] |
| rs73775158 | 1.00[EUR][1000 genomes] |
| rs73775162 | 1.00[EUR][1000 genomes] |
| rs7726347 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9326840 | 0.91[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9764305 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882404 | chr5:97281641-97638743 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv882406 | chr5:97507280-97638743 | ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv882407 | chr5:97553255-97783046 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | esv3383905 | chr5:97589090-97618236 | Enhancers Strong transcription ZNF genes & repeats Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv882408 | chr5:97616089-97836794 | Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:97603200-97634200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr5:97613000-97622800 | Weak transcription | NHDF-Ad | bronchial |
