Variant report

Variant	rs6870416
Chromosome Location	chr5:97972060-97972061
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10044680	1.00[EUR][1000 genomes]
rs10045317	1.00[EUR][1000 genomes]
rs10046011	1.00[EUR][1000 genomes]
rs10060286	1.00[EUR][1000 genomes]
rs1382336	1.00[EUR][1000 genomes]
rs1421635	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17166187	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17166195	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17166198	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17166210	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17166218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17166224	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17166397	1.00[EUR][1000 genomes]
rs1819976	1.00[AMR][1000 genomes]
rs1828171	1.00[EUR][1000 genomes]
rs28782775	1.00[EUR][1000 genomes]
rs325216	1.00[EUR][1000 genomes]
rs57969582	1.00[EUR][1000 genomes]
rs59156696	1.00[EUR][1000 genomes]
rs60190260	1.00[EUR][1000 genomes]
rs60740011	1.00[EUR][1000 genomes]
rs61578983	1.00[EUR][1000 genomes]
rs6875233	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6891520	1.00[EUR][1000 genomes]
rs6897884	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151499	1.00[EUR][1000 genomes]
rs73153514	1.00[EUR][1000 genomes]
rs73153532	1.00[EUR][1000 genomes]
rs73772968	1.00[EUR][1000 genomes]
rs73772970	1.00[EUR][1000 genomes]
rs73773002	1.00[EUR][1000 genomes]
rs73777006	1.00[EUR][1000 genomes]
rs73777023	1.00[EUR][1000 genomes]
rs7727696	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1832089	chr5:97934125-97976039	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97967400-97975000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:97971600-97974000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:97971800-97972800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:97971800-97973000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:97971800-97973000	Weak transcription	HSMMtube	muscle
6	chr5:97971800-97973200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:97971800-97973400	Weak transcription	Adipose Nuclei	Adipose
8	chr5:97971800-97973600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:97971800-97973600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:97971800-97974000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr5:97971800-97974000	Weak transcription	HSMM	muscle
12	chr5:97971800-97974200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr5:97971800-97974200	Weak transcription	NHLF	lung
14	chr5:97971800-97975000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:97972000-97973000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:97972000-97973000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:97972000-97973000	Weak transcription	NHDF-Ad	bronchial
18	chr5:97972000-97973200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr5:97972000-97973400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:97972000-97973400	Weak transcription	Osteobl	bone
21	chr5:97972000-97973600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr5:97972000-97973800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr5:97972000-97974000	Weak transcription	Small Intestine	intestine
24	chr5:97972000-97975000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:97972000-97977600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr5:97972000-97977600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links