Variant report

Variant	rs6871563
Chromosome Location	chr5:97702094-97702095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10043870	1.00[EUR][1000 genomes]
rs10050543	0.81[AFR][1000 genomes]
rs10057215	1.00[EUR][1000 genomes]
rs10062168	1.00[EUR][1000 genomes]
rs10477671	1.00[EUR][1000 genomes]
rs13360238	1.00[EUR][1000 genomes]
rs60190260	1.00[EUR][1000 genomes]
rs60839554	1.00[EUR][1000 genomes]
rs6859395	1.00[EUR][1000 genomes]
rs6868573	1.00[EUR][1000 genomes]
rs6872658	1.00[EUR][1000 genomes]
rs6877771	1.00[EUR][1000 genomes]
rs6890493	0.83[AFR][1000 genomes]
rs73151330	1.00[EUR][1000 genomes]
rs73155402	1.00[EUR][1000 genomes]
rs73157304	1.00[EUR][1000 genomes]
rs73157315	1.00[EUR][1000 genomes]
rs73159254	1.00[EUR][1000 genomes]
rs73772968	1.00[EUR][1000 genomes]
rs73772970	1.00[EUR][1000 genomes]
rs7702702	0.82[AFR][1000 genomes]
rs7726347	1.00[EUR][1000 genomes]
rs9326840	1.00[EUR][1000 genomes]
rs9764305	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv4928	chr5:97689980-97734899	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97697600-97705200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:97702000-97702200	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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