Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10036942	1.00[JPT][hapmap]
rs10056236	1.00[JPT][hapmap]
rs10057707	1.00[JPT][hapmap]
rs10060208	1.00[JPT][hapmap]
rs10060828	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10064862	1.00[JPT][hapmap]
rs10066110	1.00[JPT][hapmap]
rs10473849	0.87[ASN][1000 genomes]
rs10474032	1.00[JPT][hapmap]
rs10474033	1.00[JPT][hapmap]
rs10942268	1.00[JPT][hapmap]
rs16876417	0.87[ASN][1000 genomes]
rs56414093	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57681369	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61511117	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6452405	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6872668	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6875373	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888401	1.00[JPT][hapmap]
rs6896772	1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6897373	1.00[JPT][hapmap]
rs6898968	1.00[JPT][hapmap]
rs73766239	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7703543	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9641	1.00[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9986216	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80690600-80702800	Weak transcription	Fetal Brain Female	brain
2	chr5:80693200-80703400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:80693400-80697000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr5:80693400-80703600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:80693400-80721600	Weak transcription	Fetal Brain Male	brain
6	chr5:80693600-80704000	Weak transcription	NHLF	lung
7	chr5:80693800-80697600	Weak transcription	Liver	Liver
8	chr5:80693800-80703000	Weak transcription	Primary T cells from cord blood	blood
9	chr5:80693800-80714600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:80694000-80704400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:80694800-80695800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:80694800-80696400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr5:80694800-80707800	Weak transcription	Dnd41	blood
14	chr5:80694800-80722400	Weak transcription	Aorta	Aorta
15	chr5:80695000-80696400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr5:80695000-80696600	Weak transcription	Placenta	Placenta
17	chr5:80695000-80703000	Weak transcription	Fetal Thymus	thymus
18	chr5:80695200-80695600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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