Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:92715751..92718525-chr5:92719287..92721343,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10044190	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10053101	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10079491	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10476518	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1157899	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11956893	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13355597	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13360184	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1460748	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6875613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6891846	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73131381	1.00[ASN][1000 genomes]
rs73131385	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73131390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73131401	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133207	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133209	1.00[ASN][1000 genomes]
rs9314083	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9314084	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9688292	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830402	chr5:92703901-92847345	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92714800-92717800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:92716600-92718000	Active TSS	Fetal Kidney	kidney
3	chr5:92716800-92717400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:92716800-92717400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:92716800-92717400	Enhancers	NH-A	brain
6	chr5:92716800-92717600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:92717200-92718200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:92717200-92719000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:92717200-92719000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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