Variant report

Variant	rs6875942
Chromosome Location	chr5:116772047-116772048
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10065401	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10075994	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1030462	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11241424	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13164082	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13358449	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13358452	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1428048	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2900102	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4455596	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4481381	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4587112	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4920870	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4920871	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4920965	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7714703	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7732741	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs950074	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv599487	chr5:116732456-116772093	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116769000-116772200	Enhancers	Colon Smooth Muscle	Colon
2	chr5:116769400-116772400	Enhancers	Rectal Smooth Muscle	rectum
3	chr5:116770200-116773000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:116770400-116772800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:116770400-116773600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:116770600-116772200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:116770600-116772800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:116770600-116774600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr5:116770800-116772800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:116770800-116772800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:116770800-116773000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:116770800-116773200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:116771000-116773000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:116771000-116773400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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