Variant report

Variant	rs6877107
Chromosome Location	chr5:118634874-118634875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118634440..118637446-chr5:118640302..118642986,4	K562	blood:

Variant related genes	Relation type
ENSG00000243333	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10054006	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757136	chr5:118555863-118667748	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv2759374	chr5:118555863-118667748	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024648	chr5:118608175-118678268	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv869828	chr5:118610548-118691190	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118625400-118637200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:118627400-118635600	Weak transcription	A549	lung
3	chr5:118627600-118635800	Weak transcription	Thymus	Thymus
4	chr5:118628000-118637000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:118628000-118637000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:118628000-118637200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:118628000-118637800	Weak transcription	Aorta	Aorta
8	chr5:118628000-118641000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:118628200-118635600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr5:118628200-118635800	Weak transcription	Primary B cells from cord blood	blood
11	chr5:118628600-118635400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr5:118629400-118635400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr5:118629400-118635400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr5:118629600-118635000	Weak transcription	Fetal Thymus	thymus
15	chr5:118629600-118635400	Weak transcription	Dnd41	blood
16	chr5:118634400-118635600	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr5:118634600-118635000	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr5:118634600-118635200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr5:118634800-118635000	Enhancers	Primary T cells fromperipheralblood	blood
20	chr5:118634800-118635000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr5:118634800-118635600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr5:118634800-118635800	Enhancers	Primary B cells from peripheral blood	blood
23	chr5:118634800-118635800	Active TSS	Primary T killer memory cells from peripheral blood	blood

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