Variant report
| Variant | rs6878804 |
|---|---|
| Chromosome Location | chr5:151480658-151480659 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10477008 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10477009 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11956862 | 0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs154694 | 0.80[AFR][1000 genomes] |
| rs160036 | 0.82[AFR][1000 genomes] |
| rs160037 | 0.82[AFR][1000 genomes] |
| rs166197 | 0.84[AFR][1000 genomes] |
| rs177439 | 0.82[AFR][1000 genomes] |
| rs185252 | 0.84[AFR][1000 genomes] |
| rs1896779 | 0.86[AFR][1000 genomes] |
| rs256151 | 1.00[ASN][1000 genomes] |
| rs29849 | 0.82[AFR][1000 genomes] |
| rs29855 | 0.80[AFR][1000 genomes] |
| rs34268622 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs39806 | 0.80[AFR][1000 genomes] |
| rs524656 | 0.85[AFR][1000 genomes] |
| rs66860936 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72802298 | 0.90[ASN][1000 genomes] |
| rs72802301 | 0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72804303 | 0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72804319 | 0.89[ASN][1000 genomes] |
| rs72804327 | 0.89[ASN][1000 genomes] |
| rs7730910 | 0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9324718 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020899 | chr5:151412785-151516788 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv508384 | chr5:151438582-151487326 | Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv2760935 | chr5:151463117-151586051 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv883039 | chr5:151471642-151540888 | Enhancers Weak transcription Bivalent Enhancer Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv883040 | chr5:151471642-151596273 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:151480600-151480800 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
