Variant report

Variant	rs6879809
Chromosome Location	chr5:60826956-60826957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60822270..60824279-chr5:60825655..60828480,2	MCF-7	breast:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10041978	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1045352	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10514910	0.81[CHB][hapmap]
rs10939900	0.80[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs10939901	0.80[ASN][1000 genomes]
rs10939902	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10939903	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10939905	1.00[ASN][1000 genomes]
rs11742658	1.00[ASN][1000 genomes]
rs11743711	0.90[ASN][1000 genomes]
rs11747564	0.95[ASN][1000 genomes]
rs11749200	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11950318	0.87[ASN][1000 genomes]
rs11952146	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11954430	0.98[ASN][1000 genomes]
rs12189001	0.80[ASN][1000 genomes]
rs12518479	0.80[ASN][1000 genomes]
rs12519658	0.81[CHB][hapmap]
rs12520628	0.81[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs12522647	0.92[ASN][1000 genomes]
rs13156100	1.00[ASN][1000 genomes]
rs13157657	0.98[ASN][1000 genomes]
rs13157831	1.00[ASN][1000 genomes]
rs13158413	0.97[ASN][1000 genomes]
rs13158675	0.80[ASN][1000 genomes]
rs13159018	0.98[ASN][1000 genomes]
rs13159166	0.96[ASN][1000 genomes]
rs13160801	0.98[ASN][1000 genomes]
rs13162358	0.80[ASN][1000 genomes]
rs13162694	0.85[ASN][1000 genomes]
rs13163970	0.98[ASN][1000 genomes]
rs13166934	0.91[ASN][1000 genomes]
rs13169711	0.80[ASN][1000 genomes]
rs13170262	0.98[ASN][1000 genomes]
rs13171497	0.95[ASN][1000 genomes]
rs13171757	0.90[ASN][1000 genomes]
rs13172080	0.98[ASN][1000 genomes]
rs13172084	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13178686	0.80[ASN][1000 genomes]
rs13179091	1.00[ASN][1000 genomes]
rs13179617	0.98[ASN][1000 genomes]
rs13181015	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs13185068	1.00[ASN][1000 genomes]
rs13186194	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13188685	1.00[ASN][1000 genomes]
rs1348716	0.98[ASN][1000 genomes]
rs1363892	0.89[ASN][1000 genomes]
rs1374043	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1445976	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445979	0.92[ASN][1000 genomes]
rs1445980	1.00[ASN][1000 genomes]
rs1445981	1.00[ASN][1000 genomes]
rs1477355	0.92[ASN][1000 genomes]
rs16892374	0.81[CHB][hapmap]
rs1986252	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2034239	1.00[ASN][1000 genomes]
rs2053693	1.00[ASN][1000 genomes]
rs2053694	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2276987	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs35262187	0.80[ASN][1000 genomes]
rs4392578	0.80[ASN][1000 genomes]
rs4484384	0.80[ASN][1000 genomes]
rs4604142	0.85[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs55838118	1.00[ASN][1000 genomes]
rs56035042	0.80[ASN][1000 genomes]
rs60529601	0.80[ASN][1000 genomes]
rs60886975	0.80[ASN][1000 genomes]
rs62368660	0.80[ASN][1000 genomes]
rs6449528	0.85[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs6449529	0.80[ASN][1000 genomes]
rs6449530	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs6449535	0.92[ASN][1000 genomes]
rs66775554	1.00[ASN][1000 genomes]
rs6860608	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs6865624	1.00[ASN][1000 genomes]
rs6873712	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6874264	1.00[ASN][1000 genomes]
rs6874266	0.98[ASN][1000 genomes]
rs6877610	0.81[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs6878927	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6881765	0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs6881799	0.85[ASN][1000 genomes]
rs6882136	0.95[ASN][1000 genomes]
rs6890351	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6895046	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6898746	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7443602	1.00[ASN][1000 genomes]
rs7700289	0.80[ASN][1000 genomes]
rs7709645	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7714457	0.98[ASN][1000 genomes]
rs7717082	0.98[ASN][1000 genomes]
rs7719647	0.98[ASN][1000 genomes]
rs7722810	0.91[ASN][1000 genomes]
rs7724551	0.85[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs7732234	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60767400-60837400	Weak transcription	Spleen	Spleen
2	chr5:60807600-60829800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr5:60812400-60827200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:60815400-60833000	Weak transcription	Fetal Brain Male	brain
5	chr5:60815800-60833000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:60815800-60837200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:60816000-60831200	Weak transcription	Ovary	ovary
8	chr5:60816000-60837800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:60816600-60827200	Weak transcription	Right Ventricle	heart
10	chr5:60817000-60837000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr5:60817000-60837400	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr5:60817600-60828800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr5:60817800-60843800	Strong transcription	HSMM	muscle
14	chr5:60818000-60838000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:60818800-60837800	Weak transcription	Fetal Heart	heart
16	chr5:60819000-60837400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr5:60819000-60837800	Weak transcription	Small Intestine	intestine
18	chr5:60819200-60837800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr5:60819600-60837000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr5:60819600-60837600	Weak transcription	Brain Germinal Matrix	brain
21	chr5:60819800-60830200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr5:60819800-60830600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr5:60819800-60832400	Weak transcription	HMEC	breast
24	chr5:60821600-60829000	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr5:60821600-60834400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr5:60821800-60827200	Weak transcription	Placenta	Placenta
27	chr5:60821800-60827200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr5:60821800-60828200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr5:60821800-60829000	Weak transcription	Esophagus	oesophagus
30	chr5:60821800-60829000	Weak transcription	Pancreas	Pancrea
31	chr5:60821800-60831400	Weak transcription	NHEK	skin
32	chr5:60821800-60833000	Weak transcription	Stomach Mucosa	stomach
33	chr5:60821800-60835200	Weak transcription	Gastric	stomach
34	chr5:60821800-60836800	Weak transcription	Colonic Mucosa	Colon
35	chr5:60822000-60833800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:60822000-60834400	Weak transcription	Thymus	Thymus
37	chr5:60822200-60827200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr5:60822200-60827200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr5:60822200-60830000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr5:60822200-60831000	Weak transcription	Lung	lung
41	chr5:60822200-60831400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr5:60822200-60835000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr5:60822200-60837800	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr5:60822400-60827000	Weak transcription	NHDF-Ad	bronchial
45	chr5:60822400-60827200	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr5:60822400-60827200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr5:60822400-60830200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr5:60822400-60830800	Weak transcription	Fetal Kidney	kidney
49	chr5:60822600-60837200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr5:60822800-60827200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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