Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10056275	1.00[ASN][1000 genomes]
rs11745887	1.00[ASN][1000 genomes]
rs13157125	1.00[ASN][1000 genomes]
rs13186687	1.00[ASN][1000 genomes]
rs16877986	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16878165	1.00[ASN][1000 genomes]
rs28531078	1.00[ASN][1000 genomes]
rs34072532	1.00[ASN][1000 genomes]
rs34886118	1.00[ASN][1000 genomes]
rs4513649	1.00[ASN][1000 genomes]
rs56679922	1.00[ASN][1000 genomes]
rs6860925	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6868695	1.00[ASN][1000 genomes]
rs6868850	1.00[ASN][1000 genomes]
rs6879253	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889130	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889641	1.00[ASN][1000 genomes]
rs71627997	1.00[ASN][1000 genomes]
rs73106785	1.00[ASN][1000 genomes]
rs73759341	1.00[ASN][1000 genomes]
rs7700547	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7707672	1.00[ASN][1000 genomes]
rs7708284	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709269	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59647200-59694200	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59650400-59674800	Weak transcription	Aorta	Aorta
3	chr5:59662600-59680200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr5:59673200-59674200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:59673200-59675000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:59674000-59674800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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