Variant report

Variant	rs6882301
Chromosome Location	chr5:95174974-95174975
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr5:95174878-95175070	HepG2	liver:	n/a	n/a
2	CEBPB	chr5:95174828-95175141	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:95173988..95176848-chr5:95177535..95179576,2	K562	blood:
2	chr5:94981172..94985318-chr5:95169805..95176246,5	MCF-7	breast:
3	chr5:95158093..95160900-chr5:95173063..95176588,5	MCF-7	breast:
4	chr5:95174305..95176507-chr5:95176517..95178834,2	MCF-7	breast:
5	chr5:94997290..94999357-chr5:95174620..95177021,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000251000	TF binding region
ENSG00000175449	Chromatin interaction
ENSG00000173221	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10055875	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10067941	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10079710	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12520664	0.96[ASN][1000 genomes]
rs2161312	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2546196	0.96[ASN][1000 genomes]
rs3797207	0.93[EUR][1000 genomes]
rs41470049	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6420125	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6556887	0.95[ASN][1000 genomes]
rs6556888	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883552	0.96[ASN][1000 genomes]
rs6884979	0.96[ASN][1000 genomes]
rs7702848	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7703084	0.95[ASN][1000 genomes]
rs7708375	0.96[ASN][1000 genomes]
rs7716279	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7719227	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830409	chr5:95006686-95204496	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1015180	chr5:95134357-95286446	Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv3425626	chr5:95172396-95175894	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95171000-95175400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:95171200-95177800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:95171800-95175400	Weak transcription	Esophagus	oesophagus
4	chr5:95171800-95175600	Weak transcription	Gastric	stomach
5	chr5:95171800-95176200	Weak transcription	Placenta	Placenta
6	chr5:95171800-95177200	Weak transcription	Colonic Mucosa	Colon
7	chr5:95171800-95177600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:95171800-95178200	Weak transcription	Right Ventricle	heart
9	chr5:95171800-95178800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:95171800-95178800	Weak transcription	Left Ventricle	heart
11	chr5:95171800-95185800	Weak transcription	Pancreas	Pancrea
12	chr5:95172200-95180400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr5:95172400-95175200	Weak transcription	Stomach Mucosa	stomach
14	chr5:95172400-95175400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr5:95172400-95177400	Weak transcription	A549	lung
16	chr5:95172600-95175400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr5:95172600-95175600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr5:95172600-95176400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:95172600-95176400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr5:95172600-95176600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:95172600-95176800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr5:95172600-95177000	Weak transcription	Adipose Nuclei	Adipose
23	chr5:95172600-95177200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:95172600-95177400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr5:95172600-95177600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr5:95172600-95177600	Weak transcription	Liver	Liver
27	chr5:95172600-95177600	Weak transcription	NHDF-Ad	bronchial
28	chr5:95172600-95177800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr5:95172600-95177800	Weak transcription	HSMMtube	muscle
30	chr5:95172600-95177800	Weak transcription	Osteobl	bone
31	chr5:95172600-95178600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr5:95172600-95178600	Weak transcription	Spleen	Spleen
33	chr5:95172800-95175600	Weak transcription	Hela-S3	cervix
34	chr5:95172800-95176800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr5:95172800-95177000	Weak transcription	Primary hematopoietic stem cells	blood
36	chr5:95172800-95177200	Weak transcription	NHLF	lung
37	chr5:95172800-95177400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr5:95172800-95177600	Weak transcription	HUVEC	blood vessel
39	chr5:95172800-95178000	Weak transcription	Dnd41	blood
40	chr5:95172800-95178200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr5:95172800-95178200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr5:95173000-95177600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr5:95173000-95178200	Weak transcription	Primary T cells from cord blood	blood
44	chr5:95173000-95178200	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr5:95173200-95178800	Enhancers	HepG2	liver
46	chr5:95173400-95180800	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr5:95173600-95175600	Enhancers	Brain Angular Gyrus	brain
48	chr5:95173600-95176800	Enhancers	Psoas Muscle	Psoas
49	chr5:95173800-95175600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr5:95173800-95175800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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