The 2.0 version of rSNPBase

Variant report

Variant rs6883256
Chromosome Location chr5:16543657-16543658
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16522400-16567400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
2 chr5:16535600-16546000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr5:16536800-16552800 Weak transcription Thymus Thymus
4 chr5:16538600-16546400 Weak transcription Right Ventricle heart
5 chr5:16539200-16554400 Weak transcription Small Intestine intestine
6 chr5:16539800-16545600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr5:16539800-16545600 Weak transcription Esophagus oesophagus
8 chr5:16539800-16545800 Weak transcription Pancreas Pancrea
9 chr5:16539800-16546400 Weak transcription Fetal Muscle Trunk muscle
10 chr5:16539800-16548400 Weak transcription Aorta Aorta
11 chr5:16539800-16548400 Weak transcription Gastric stomach
12 chr5:16540400-16544000 Enhancers Primary T helper naive cells fromperipheralblood blood
13 chr5:16540400-16545000 Weak transcription Placenta Amnion Placenta Amnion
14 chr5:16540600-16544600 Weak transcription Fetal Intestine Small intestine
15 chr5:16540800-16544200 Enhancers Primary T helper cells PMA-I stimulated --
16 chr5:16541000-16544200 Weak transcription Skeletal Muscle Male skeletal muscle
17 chr5:16541200-16544200 Weak transcription Brain Hippocampus Middle brain
18 chr5:16541200-16544200 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr5:16541200-16544400 Weak transcription Brain Inferior Temporal Lobe brain
20 chr5:16541200-16544600 Weak transcription HSMMtube muscle
21 chr5:16541200-16544800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr5:16541200-16544800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr5:16541200-16545000 Weak transcription Brain Angular Gyrus brain
24 chr5:16541200-16547000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr5:16541200-16547000 Weak transcription HSMM muscle
26 chr5:16541200-16548800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
27 chr5:16541200-16549600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr5:16541200-16552000 Weak transcription Breast Myoepithelial Primary Cells Breast
29 chr5:16541400-16544800 Weak transcription Brain Anterior Caudate brain
30 chr5:16541400-16544800 Weak transcription NHDF-Ad bronchial
31 chr5:16541400-16544800 Weak transcription NHEK skin
32 chr5:16541400-16549800 Weak transcription HMEC breast
33 chr5:16542200-16547800 Enhancers Brain Substantia Nigra brain
34 chr5:16542600-16545200 Weak transcription Fetal Muscle Leg muscle
35 chr5:16542600-16567200 Weak transcription Primary T cells fromperipheralblood blood
36 chr5:16543000-16544800 Weak transcription Primary T helper naive cells from peripheral blood blood
37 chr5:16543000-16545600 Weak transcription Psoas Muscle Psoas
38 chr5:16543200-16544000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr5:16543200-16544000 Enhancers Rectal Mucosa Donor 31 rectum
40 chr5:16543200-16544400 Weak transcription Fetal Heart heart
41 chr5:16543200-16544600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr5:16543200-16545400 Weak transcription Right Atrium heart
43 chr5:16543200-16547200 Weak transcription Fetal Intestine Large intestine
44 chr5:16543200-16548400 Weak transcription Primary T cells from cord blood blood
45 chr5:16543200-16548400 Weak transcription Sigmoid Colon Sigmoid Colon
46 chr5:16543200-16591600 Weak transcription Primary T killer naive cells fromperipheralblood blood
47 chr5:16543400-16544600 Weak transcription Brain Cingulate Gyrus brain
48 chr5:16543400-16546800 Weak transcription Pancreatic Islets Pancreatic Islet
49 chr5:16543400-16547000 Weak transcription Muscle Satellite Cultured Cells --
50 chr5:16543400-16547200 Weak transcription NH-A brain

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Last update: Aug 31, 2015