Variant report

Variant	rs6883625
Chromosome Location	chr5:97969800-97969801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10038064	1.00[ASN][1000 genomes]
rs10038307	0.92[ASN][1000 genomes]
rs10039819	0.92[ASN][1000 genomes]
rs10043199	1.00[ASN][1000 genomes]
rs10045612	1.00[ASN][1000 genomes]
rs10059259	0.92[ASN][1000 genomes]
rs10065249	0.92[ASN][1000 genomes]
rs10068399	0.89[ASN][1000 genomes]
rs10075691	0.94[ASN][1000 genomes]
rs10479181	0.92[ASN][1000 genomes]
rs10479183	0.86[ASN][1000 genomes]
rs10515282	0.83[ASN][1000 genomes]
rs11242242	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11242255	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11949924	0.83[ASN][1000 genomes]
rs11950934	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361670	1.00[ASN][1000 genomes]
rs1421633	1.00[ASN][1000 genomes]
rs1421634	1.00[ASN][1000 genomes]
rs149126	0.83[ASN][1000 genomes]
rs152960	0.83[EUR][1000 genomes]
rs152964	0.81[EUR][1000 genomes]
rs154201	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs154203	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs154204	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17166201	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17661925	0.92[ASN][1000 genomes]
rs187385	0.83[EUR][1000 genomes]
rs2080994	0.94[ASN][1000 genomes]
rs2112145	1.00[ASN][1000 genomes]
rs245444	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs27023	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs27025	0.83[EUR][1000 genomes]
rs27027	0.82[EUR][1000 genomes]
rs27032	0.83[EUR][1000 genomes]
rs27576	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs27577	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs27787	0.83[EUR][1000 genomes]
rs28079	0.82[EUR][1000 genomes]
rs29662	0.83[EUR][1000 genomes]
rs36758	0.83[ASN][1000 genomes]
rs36767	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs387158	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3907829	0.89[ASN][1000 genomes]
rs3909494	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs398955	0.83[EUR][1000 genomes]
rs40175	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4018045	0.83[ASN][1000 genomes]
rs4277375	0.94[ASN][1000 genomes]
rs457225	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs463314	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs464686	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs465312	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs467627	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs467657	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs468016	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59126397	0.84[ASN][1000 genomes]
rs6895508	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73149511	0.92[ASN][1000 genomes]
rs7444475	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1832089	chr5:97934125-97976039	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97967400-97975000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:97967800-97970600	Weak transcription	NHLF	lung
3	chr5:97967800-97971200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:97968000-97971200	Weak transcription	HSMMtube	muscle
5	chr5:97968200-97970800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:97968200-97971200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:97968200-97971400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:97968400-97970000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:97968400-97971000	Weak transcription	HSMM	muscle
10	chr5:97968600-97969800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:97969200-97970400	Weak transcription	Osteobl	bone
12	chr5:97969200-97970800	Weak transcription	NHDF-Ad	bronchial
13	chr5:97969800-97972000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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