The 2.0 version of rSNPBase

Variant report

Variant rs6884379
Chromosome Location chr5:80830703-80830704
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:80779000-80834400 Weak transcription Fetal Muscle Leg muscle
2 chr5:80797000-80834000 Weak transcription Primary B cells from peripheral blood blood
3 chr5:80803200-80834400 Weak transcription Fetal Kidney kidney
4 chr5:80803200-80835200 Weak transcription GM12878-XiMat blood
5 chr5:80803600-80875200 Weak transcription Fetal Brain Female brain
6 chr5:80820200-80851800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr5:80820800-80834600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
8 chr5:80821600-80832200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr5:80821800-80836800 Weak transcription NHDF-Ad bronchial
10 chr5:80821800-80849000 Weak transcription Cortex derived primary cultured neurospheres brain
11 chr5:80825200-80865200 Weak transcription Fetal Brain Male brain
12 chr5:80827000-80840600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr5:80827000-80848200 Weak transcription Left Ventricle heart
14 chr5:80827600-80835600 Enhancers Primary T cells from cord blood blood
15 chr5:80828400-80834400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr5:80828800-80830800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
17 chr5:80828800-80830800 Enhancers Primary T killer memory cells from peripheral blood blood
18 chr5:80828800-80863400 Weak transcription Fetal Lung lung
19 chr5:80829200-80830800 Enhancers Primary hematopoietic stem cells short term culture blood
20 chr5:80829200-80831000 Enhancers Primary hematopoietic stem cells blood
21 chr5:80829200-80832400 Enhancers Dnd41 blood
22 chr5:80829400-80830800 Enhancers Breast Myoepithelial Primary Cells Breast
23 chr5:80829400-80830800 Enhancers Primary monocytes fromperipheralblood blood
24 chr5:80829400-80830800 Enhancers Primary T helper naive cells from peripheral blood blood
25 chr5:80829400-80830800 Enhancers Primary T helper naive cells fromperipheralblood blood
26 chr5:80829400-80830800 Enhancers Primary T helper cells PMA-I stimulated --
27 chr5:80829400-80830800 Enhancers Primary T killer naive cells fromperipheralblood blood
28 chr5:80829400-80831000 Enhancers Primary T helper cells fromperipheralblood blood
29 chr5:80829600-80831000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr5:80829800-80830800 Enhancers Adipose Nuclei Adipose
31 chr5:80829800-80830800 Enhancers Colon Smooth Muscle Colon
32 chr5:80829800-80830800 Enhancers Monocytes-CD14+_RO01746 blood
33 chr5:80830000-80830800 Enhancers Primary neutrophils fromperipheralblood blood
34 chr5:80830000-80830800 Enhancers Fetal Thymus thymus
35 chr5:80830000-80833200 Weak transcription Thymus Thymus
36 chr5:80830000-80833600 Weak transcription Primary T cells fromperipheralblood blood
37 chr5:80830000-80848800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
38 chr5:80830000-80853800 Weak transcription Skeletal Muscle Female skeletal muscle
39 chr5:80830200-80831000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr5:80830200-80833000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
41 chr5:80830200-80848600 Weak transcription Skeletal Muscle Male skeletal muscle
42 chr5:80830400-80831000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr5:80830400-80833200 Weak transcription Stomach Mucosa stomach
44 chr5:80830400-80845000 Weak transcription Fetal Heart heart
45 chr5:80830600-80833000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
46 chr5:80830600-80840200 Weak transcription Primary B cells from cord blood blood
47 chr5:80830600-80841400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015