Variant report

Variant	rs6886693
Chromosome Location	chr5:97950466-97950467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10515279	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11952710	1.00[AMR][1000 genomes]
rs11953103	1.00[AMR][1000 genomes]
rs11953718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11954005	1.00[AMR][1000 genomes]
rs11954858	1.00[AMR][1000 genomes]
rs11956218	1.00[AMR][1000 genomes]
rs11957136	1.00[AMR][1000 genomes]
rs11957743	1.00[AMR][1000 genomes]
rs11958713	0.85[AFR][1000 genomes]
rs11959969	1.00[AMR][1000 genomes]
rs17165503	1.00[AMR][1000 genomes]
rs17166168	1.00[AMR][1000 genomes]
rs17166173	1.00[AMR][1000 genomes]
rs17166219	1.00[AMR][1000 genomes]
rs36072176	1.00[AMR][1000 genomes]
rs6873703	1.00[AMR][1000 genomes]
rs6874397	1.00[AMR][1000 genomes]
rs7731093	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1832089	chr5:97934125-97976039	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97946400-97967200	Weak transcription	HSMMtube	muscle
2	chr5:97948400-97950600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:97948400-97950600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:97950400-97950800	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr5:97950400-97951400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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