Variant report

Variant	rs6890493
Chromosome Location	chr5:97712128-97712129
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10035546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10036788	0.89[ASN][1000 genomes]
rs10036839	0.89[ASN][1000 genomes]
rs10050404	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10050543	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10054643	0.89[ASN][1000 genomes]
rs10074663	0.83[EUR][1000 genomes]
rs10076590	0.90[ASN][1000 genomes]
rs11950953	0.89[ASN][1000 genomes]
rs11953877	0.89[ASN][1000 genomes]
rs11953894	0.89[ASN][1000 genomes]
rs11954911	0.89[ASN][1000 genomes]
rs11955115	0.89[ASN][1000 genomes]
rs11959995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12516014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs12516667	1.00[ASN][1000 genomes]
rs12517476	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12519087	1.00[ASN][1000 genomes]
rs12520566	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12523434	0.90[ASN][1000 genomes]
rs1378443	0.83[EUR][1000 genomes]
rs1378445	0.83[EUR][1000 genomes]
rs1455424	0.89[ASN][1000 genomes]
rs1455425	0.89[ASN][1000 genomes]
rs1455426	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs1455432	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17165943	1.00[ASN][1000 genomes]
rs35382921	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4702968	1.00[ASN][1000 genomes]
rs4702970	1.00[ASN][1000 genomes]
rs4703066	1.00[ASN][1000 genomes]
rs4703070	0.90[ASN][1000 genomes]
rs4703347	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703354	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59277777	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59423561	0.89[ASN][1000 genomes]
rs60249733	1.00[ASN][1000 genomes]
rs60702807	0.83[EUR][1000 genomes]
rs61740530	0.82[EUR][1000 genomes]
rs62369875	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6594645	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6594647	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6596727	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.83[EUR][1000 genomes]
rs6596743	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6596748	0.89[ASN][1000 genomes]
rs6862206	0.89[ASN][1000 genomes]
rs6863762	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.83[EUR][1000 genomes]
rs6870895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6871138	0.81[AFR][1000 genomes]
rs6871563	0.83[AFR][1000 genomes]
rs6872708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6872831	0.89[ASN][1000 genomes]
rs6877032	0.89[ASN][1000 genomes]
rs6882939	0.83[EUR][1000 genomes]
rs6885408	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6885953	0.83[EUR][1000 genomes]
rs6887168	0.83[EUR][1000 genomes]
rs73143833	1.00[ASN][1000 genomes]
rs73159220	0.89[ASN][1000 genomes]
rs73159222	0.89[ASN][1000 genomes]
rs73159223	0.89[ASN][1000 genomes]
rs73159226	0.89[ASN][1000 genomes]
rs73159258	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7702659	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7702702	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7714842	1.00[ASN][1000 genomes]
rs7715004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7718848	0.83[EUR][1000 genomes]
rs7734263	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7734271	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882407	chr5:97553255-97783046	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830419	chr5:97653713-97829079	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv4928	chr5:97689980-97734899	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97707200-97719200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:97710600-97712200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:97710800-97712400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:97710800-97712400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:97711600-97714600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:97712000-97713800	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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