Variant report

Variant	rs6891356
Chromosome Location	chr5:116549323-116549324
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10066055	0.81[EUR][1000 genomes]
rs10080021	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10085046	0.82[EUR][1000 genomes]
rs11957082	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13170803	0.81[EUR][1000 genomes]
rs1389935	0.82[EUR][1000 genomes]
rs1494818	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1494820	0.80[EUR][1000 genomes]
rs1494821	0.81[EUR][1000 genomes]
rs1494823	0.81[EUR][1000 genomes]
rs17141334	0.81[ASN][1000 genomes]
rs17141342	0.81[ASN][1000 genomes]
rs1908408	0.81[EUR][1000 genomes]
rs1908409	0.82[EUR][1000 genomes]
rs34199913	0.85[AFR][1000 genomes]
rs34421802	0.86[AFR][1000 genomes]
rs55813945	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55985764	0.81[ASN][1000 genomes]
rs56020309	0.82[EUR][1000 genomes]
rs60269947	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6595018	0.86[AFR][1000 genomes]
rs6595020	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6595026	0.82[EUR][1000 genomes]
rs6862441	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6870246	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6875387	0.88[AFR][1000 genomes]
rs7702997	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7703434	0.82[EUR][1000 genomes]
rs7710974	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7714476	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7729749	0.82[EUR][1000 genomes]
rs7730432	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882752	chr5:116505127-116549323	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
2	nsv882753	chr5:116505127-116549669	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv882754	chr5:116505127-116553503	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116541800-116550600	Weak transcription	Stomach Mucosa	stomach
2	chr5:116543000-116559000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:116548400-116549800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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