Variant report

Variant	rs6895015
Chromosome Location	chr5:80774346-80774347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13159596	0.91[ASN][1000 genomes]
rs13165194	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13177962	1.00[ASN][1000 genomes]
rs34672841	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35663154	0.91[ASN][1000 genomes]
rs35810595	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35856763	0.82[ASN][1000 genomes]
rs35883849	0.93[ASN][1000 genomes]
rs35995231	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3764986	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3792923	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366209	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366246	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6452409	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66563423	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6865796	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6866727	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6894847	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6896009	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7702374	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7725131	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7725277	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7737895	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9918175	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1028498	chr5:80712364-80860430	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80703200-80779200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:80735400-80778600	Weak transcription	Aorta	Aorta
3	chr5:80766200-80800000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr5:80769800-80776400	Weak transcription	Pancreas	Pancrea
5	chr5:80769800-80778600	Weak transcription	K562	blood
6	chr5:80769800-80779600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr5:80770000-80774400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr5:80770000-80776200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:80770000-80777600	Weak transcription	Fetal Muscle Leg	muscle
10	chr5:80770000-80778000	Weak transcription	Thymus	Thymus
11	chr5:80770000-80778200	Weak transcription	Primary B cells from cord blood	blood
12	chr5:80770000-80779400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr5:80770000-80781000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr5:80770000-80782600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:80770000-80787800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr5:80770000-80789000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:80770000-80790400	Weak transcription	Right Ventricle	heart
18	chr5:80770000-80797800	Weak transcription	GM12878-XiMat	blood
19	chr5:80770000-80800200	Weak transcription	Brain Anterior Caudate	brain
20	chr5:80770000-80801600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr5:80770000-80801600	Weak transcription	NHLF	lung
22	chr5:80770000-80803000	Weak transcription	Fetal Kidney	kidney
23	chr5:80770000-80811000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr5:80770000-80812000	Weak transcription	Left Ventricle	heart
25	chr5:80770200-80782600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr5:80770200-80782600	Weak transcription	Adipose Nuclei	Adipose
27	chr5:80770200-80784200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr5:80770200-80794800	Weak transcription	Fetal Brain Female	brain
29	chr5:80770200-80811000	Weak transcription	Colon Smooth Muscle	Colon
30	chr5:80770400-80778000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr5:80770400-80778000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr5:80770400-80778400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr5:80770400-80778600	Weak transcription	Primary T cells from cord blood	blood
34	chr5:80770400-80779400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr5:80770400-80781400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr5:80770400-80793600	Weak transcription	Brain Germinal Matrix	brain
37	chr5:80770400-80801600	Weak transcription	Ovary	ovary
38	chr5:80770400-80808200	Weak transcription	Fetal Stomach	stomach
39	chr5:80770600-80778000	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr5:80771000-80776400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr5:80771000-80776600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr5:80771000-80777800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr5:80771000-80778400	Weak transcription	Fetal Lung	lung
44	chr5:80771000-80780200	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr5:80771200-80799600	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr5:80773200-80776200	Weak transcription	Fetal Thymus	thymus
47	chr5:80773200-80778000	Weak transcription	Dnd41	blood
48	chr5:80773200-80778400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr5:80773400-80776000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr5:80773400-80786600	Weak transcription	Primary hematopoietic stem cells	blood

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