Variant report

Variant	rs6895725
Chromosome Location	chr5:75696657-75696658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75669499..75672050-chr5:75695299..75697873,2	MCF-7	breast:
2	chr5:75694312..75697795-chr5:75697903..75700396,3	K562	blood:

Variant related genes	Relation type
ENSG00000145703	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10043040	0.89[EUR][1000 genomes]
rs10044351	0.89[EUR][1000 genomes]
rs10044370	0.89[EUR][1000 genomes]
rs10044373	0.89[EUR][1000 genomes]
rs10057706	0.82[ASN][1000 genomes]
rs10059376	0.82[ASN][1000 genomes]
rs10065322	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10068074	0.89[EUR][1000 genomes]
rs10068404	0.82[EUR][1000 genomes]
rs10070688	0.89[EUR][1000 genomes]
rs10072221	0.89[EUR][1000 genomes]
rs10073228	0.89[EUR][1000 genomes]
rs10073282	0.89[EUR][1000 genomes]
rs10073382	0.91[EUR][1000 genomes]
rs10073448	0.91[EUR][1000 genomes]
rs10075621	0.81[ASN][1000 genomes]
rs10077372	0.89[EUR][1000 genomes]
rs10079393	0.88[EUR][1000 genomes]
rs10462539	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10462540	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1122654	0.83[ASN][1000 genomes]
rs11738470	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11740038	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11744637	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11747990	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11749318	0.89[EUR][1000 genomes]
rs12189455	0.82[ASN][1000 genomes]
rs12523532	0.90[EUR][1000 genomes]
rs13175420	0.91[EUR][1000 genomes]
rs13357820	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1984636	0.83[ASN][1000 genomes]
rs28386181	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3886042	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3886043	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3951318	0.82[ASN][1000 genomes]
rs4254886	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4296785	0.84[ASN][1000 genomes]
rs4501323	0.84[ASN][1000 genomes]
rs4501324	0.84[ASN][1000 genomes]
rs4615280	0.89[EUR][1000 genomes]
rs4704310	0.84[ASN][1000 genomes]
rs55995866	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56189196	0.89[EUR][1000 genomes]
rs57929471	0.84[ASN][1000 genomes]
rs59428516	0.88[EUR][1000 genomes]
rs60570368	0.89[EUR][1000 genomes]
rs62363209	0.83[ASN][1000 genomes]
rs62363210	0.87[ASN][1000 genomes]
rs62363211	0.82[ASN][1000 genomes]
rs6453217	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6865628	0.90[EUR][1000 genomes]
rs6887962	0.91[EUR][1000 genomes]
rs7706926	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7707426	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7718641	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7731240	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs875541	0.82[ASN][1000 genomes]
rs875543	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75685200-75697400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:75685200-75697600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:75689000-75697400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:75689200-75696800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:75689200-75698200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:75689400-75697600	Weak transcription	K562	blood
7	chr5:75691200-75696800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr5:75691200-75697000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:75691400-75696800	Weak transcription	Primary T cells from cord blood	blood
10	chr5:75691400-75696800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr5:75692800-75697000	Weak transcription	Placenta	Placenta
12	chr5:75694600-75696800	Weak transcription	GM12878-XiMat	blood
13	chr5:75695800-75697400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr5:75696000-75697000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr5:75696000-75697800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:75696200-75697600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr5:75696400-75697200	Enhancers	Primary B cells from cord blood	blood
18	chr5:75696400-75697400	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr5:75696400-75697600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:75696400-75697800	Enhancers	HepG2	liver
21	chr5:75696600-75697400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr5:75696600-75697600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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