Variant report

Variant	rs6896772
Chromosome Location	chr5:80732111-80732112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10036942	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10050981	0.89[ASN][1000 genomes]
rs10054360	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10056236	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10057707	1.00[JPT][hapmap]
rs10060208	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10060828	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064862	1.00[JPT][hapmap]
rs10066110	1.00[JPT][hapmap]
rs10474032	1.00[JPT][hapmap]
rs10474033	1.00[JPT][hapmap]
rs10474035	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10514221	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10942268	1.00[JPT][hapmap]
rs13354281	0.89[ASN][1000 genomes]
rs16876417	1.00[JPT][hapmap]
rs16898989	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs28546170	0.89[ASN][1000 genomes]
rs56414093	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57587453	0.89[ASN][1000 genomes]
rs57681369	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58652756	0.89[ASN][1000 genomes]
rs61511117	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61561045	0.89[ASN][1000 genomes]
rs6452405	0.87[ASN][1000 genomes]
rs6452417	0.89[ASN][1000 genomes]
rs6869839	0.89[ASN][1000 genomes]
rs6872668	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6875373	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6875430	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6884379	0.89[ASN][1000 genomes]
rs6887061	0.89[ASN][1000 genomes]
rs6888401	1.00[JPT][hapmap]
rs6893886	0.89[ASN][1000 genomes]
rs6897373	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6898968	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs73133677	0.89[ASN][1000 genomes]
rs73135608	0.89[ASN][1000 genomes]
rs73766239	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7703543	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7717767	0.89[ASN][1000 genomes]
rs9293277	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9641	1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9986216	1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1028498	chr5:80712364-80860430	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80697200-80739600	Weak transcription	Left Ventricle	heart
2	chr5:80702200-80733600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:80703200-80779200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:80704400-80747600	Weak transcription	Placenta	Placenta
5	chr5:80707400-80748400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:80709200-80755200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr5:80713600-80769200	Weak transcription	Esophagus	oesophagus
8	chr5:80716200-80767800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:80716800-80768400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:80717000-80743800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:80717200-80769200	Weak transcription	Right Ventricle	heart
12	chr5:80718000-80768800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr5:80718400-80752600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:80718400-80754800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr5:80718400-80755000	Weak transcription	GM12878-XiMat	blood
16	chr5:80719000-80769200	Weak transcription	HSMMtube	muscle
17	chr5:80721600-80739800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:80722000-80754800	Weak transcription	HSMM	muscle
19	chr5:80722400-80746600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr5:80722400-80754800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr5:80722400-80755200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr5:80722400-80768800	Weak transcription	Colon Smooth Muscle	Colon
23	chr5:80722400-80768800	Weak transcription	Fetal Brain Female	brain
24	chr5:80722600-80732800	Weak transcription	Brain Angular Gyrus	brain
25	chr5:80722600-80736000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr5:80722600-80748600	Weak transcription	Ovary	ovary
27	chr5:80722600-80767600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr5:80722600-80768000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr5:80722600-80768200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr5:80722600-80769000	Weak transcription	Brain Hippocampus Middle	brain
31	chr5:80722600-80769000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr5:80722600-80769000	Weak transcription	Fetal Brain Male	brain
33	chr5:80722600-80769000	Weak transcription	Psoas Muscle	Psoas
34	chr5:80722600-80769200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr5:80722800-80744200	Weak transcription	Adipose Nuclei	Adipose
36	chr5:80722800-80747800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr5:80722800-80748400	Weak transcription	Fetal Lung	lung
38	chr5:80722800-80755200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr5:80724000-80748400	Weak transcription	Fetal Muscle Leg	muscle
40	chr5:80725200-80748000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr5:80725400-80755200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr5:80726200-80733000	Weak transcription	Pancreas	Pancrea
43	chr5:80726800-80737800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr5:80728400-80735200	Weak transcription	Fetal Stomach	stomach
45	chr5:80729400-80737600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr5:80729400-80738200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr5:80729400-80738600	Strong transcription	Fetal Thymus	thymus
48	chr5:80729600-80769200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr5:80729800-80734800	Strong transcription	Dnd41	blood
50	chr5:80729800-80769200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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