Variant report

Variant	rs6897373
Chromosome Location	chr5:80887486-80887487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10036942	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10050981	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10054360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10056236	1.00[JPT][hapmap];0.85[LWK][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs10057707	1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[ASN][1000 genomes]
rs10059425	0.81[EUR][1000 genomes]
rs10060208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10060828	0.89[ASN][1000 genomes]
rs10062494	0.81[EUR][1000 genomes]
rs10064862	1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[ASN][1000 genomes]
rs10064938	0.81[EUR][1000 genomes]
rs10066110	1.00[JPT][hapmap];0.81[YRI][hapmap];0.90[ASN][1000 genomes]
rs10069094	0.90[YRI][hapmap];0.90[AFR][1000 genomes]
rs10078696	1.00[TSI][hapmap]
rs10473849	0.89[ASN][1000 genomes]
rs10473850	0.81[EUR][1000 genomes]
rs10474032	1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[ASN][1000 genomes]
rs10474033	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10474035	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10942268	1.00[JPT][hapmap];0.85[LWK][hapmap];0.90[YRI][hapmap];0.90[ASN][1000 genomes]
rs10942277	0.81[EUR][1000 genomes]
rs10942278	0.85[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs10942279	0.85[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs12515751	0.85[YRI][hapmap]
rs13354281	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13357855	0.90[ASN][1000 genomes]
rs13360410	0.81[EUR][1000 genomes]
rs13360536	0.85[GIH][hapmap];1.00[TSI][hapmap]
rs13362287	0.85[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs1373965	0.81[EUR][1000 genomes]
rs16876417	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs16898989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16899116	0.88[TSI][hapmap]
rs28465130	0.90[ASN][1000 genomes]
rs28546170	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28825230	0.82[AFR][1000 genomes]
rs4529168	0.82[YRI][hapmap]
rs55792529	0.81[EUR][1000 genomes]
rs56414093	0.89[ASN][1000 genomes]
rs57587453	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57681369	0.89[ASN][1000 genomes]
rs58050716	0.81[EUR][1000 genomes]
rs58238009	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58652756	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61561045	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6452417	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6452422	0.81[EUR][1000 genomes]
rs6859225	0.80[YRI][hapmap]
rs6869839	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6872195	0.81[EUR][1000 genomes]
rs6872668	0.89[ASN][1000 genomes]
rs6882480	0.88[TSI][hapmap]
rs6884379	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6887061	1.00[CEU][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6887447	0.81[EUR][1000 genomes]
rs6888401	1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[ASN][1000 genomes]
rs6893886	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6896772	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6898968	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133677	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133692	0.90[ASN][1000 genomes]
rs73135608	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73135614	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs73135635	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73135661	0.81[EUR][1000 genomes]
rs73766239	0.89[ASN][1000 genomes]
rs7707946	0.81[EUR][1000 genomes]
rs7710001	1.00[TSI][hapmap]
rs7717767	1.00[CEU][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7721321	0.90[YRI][hapmap]
rs9293277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9641	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9986216	1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882233	chr5:80849084-81049187	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv882234	chr5:80853708-80966666	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv525437	chr5:80876359-80964452	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80864200-80894200	Weak transcription	Fetal Lung	lung
2	chr5:80864600-80894200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr5:80869400-80887600	Weak transcription	Fetal Stomach	stomach
4	chr5:80870000-80887600	Weak transcription	Aorta	Aorta
5	chr5:80870800-80894200	Weak transcription	Primary B cells from cord blood	blood
6	chr5:80875600-80894000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:80875600-80894200	Weak transcription	GM12878-XiMat	blood
8	chr5:80876000-80894200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:80879000-80887600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:80881400-80894200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr5:80882800-80888000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:80883200-80887600	Weak transcription	Brain Germinal Matrix	brain
13	chr5:80883200-80905800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr5:80883800-80909200	Weak transcription	HSMM	muscle
15	chr5:80885000-80894200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:80885200-80905400	Weak transcription	Pancreas	Pancrea
17	chr5:80885800-80887800	Enhancers	Dnd41	blood
18	chr5:80886200-80888600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
19	chr5:80886400-80888800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr5:80886800-80905400	Weak transcription	Brain Substantia Nigra	brain
21	chr5:80887000-80887600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:80887000-80888400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:80887000-80894400	Weak transcription	Left Ventricle	heart
24	chr5:80887000-80905600	Weak transcription	Brain Anterior Caudate	brain
25	chr5:80887000-80922400	Weak transcription	Psoas Muscle	Psoas
26	chr5:80887200-80887600	Weak transcription	Fetal Thymus	thymus
27	chr5:80887200-80887800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
28	chr5:80887200-80894200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr5:80887200-80894200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr5:80887200-80894400	Weak transcription	Primary T cells from cord blood	blood
31	chr5:80887200-80894400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr5:80887200-80894400	Weak transcription	Thymus	Thymus
33	chr5:80887200-80898000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr5:80887200-80905400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr5:80887200-80911200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr5:80887400-80887600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
37	chr5:80887400-80904600	Weak transcription	Osteobl	bone

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