Variant report

Variant	rs6898957
Chromosome Location	chr5:92115861-92115862
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17082555	1.00[EUR][1000 genomes]
rs56715581	1.00[EUR][1000 genomes]
rs59258692	1.00[EUR][1000 genomes]
rs59369031	1.00[EUR][1000 genomes]
rs60126216	1.00[EUR][1000 genomes]
rs61675340	1.00[EUR][1000 genomes]
rs73140852	1.00[EUR][1000 genomes]
rs73140856	1.00[EUR][1000 genomes]
rs73140858	1.00[EUR][1000 genomes]
rs73140859	1.00[EUR][1000 genomes]
rs73140863	1.00[EUR][1000 genomes]
rs73140864	1.00[EUR][1000 genomes]
rs73140868	1.00[EUR][1000 genomes]
rs73140899	1.00[EUR][1000 genomes]
rs73140901	1.00[EUR][1000 genomes]
rs73142810	1.00[EUR][1000 genomes]
rs73142812	1.00[EUR][1000 genomes]
rs73142822	1.00[EUR][1000 genomes]
rs7736450	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830398	chr5:92102826-92281331	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92113400-92118000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:92114800-92116400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr5:92115600-92116400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:92115600-92116400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:92115800-92116000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr5:92115800-92116600	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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