Variant report

Variant	rs6900072
Chromosome Location	chr6:54707110-54707111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10080497	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10080987	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1021836	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10948855	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12194012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12210299	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1503133	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1566753	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1812584	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1910356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976537	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1976538	0.86[EUR][1000 genomes]
rs2397168	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2397169	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2397170	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2397171	0.87[EUR][1000 genomes]
rs3929470	0.87[EUR][1000 genomes]
rs4318881	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4516942	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4712073	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4715485	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459026	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6459027	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6459029	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6916818	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6919743	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6922968	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926214	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6931473	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6937981	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746125	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7749110	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7751955	0.80[ASN][1000 genomes]
rs7752214	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7760890	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7762606	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7770409	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9349732	0.88[EUR][1000 genomes]
rs9367591	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9370328	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9370332	0.87[AFR][1000 genomes]
rs9395997	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9464145	0.80[EUR][1000 genomes]
rs9464146	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9464151	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs965009	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs973020	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54705000-54707200	Weak transcription	HMEC	breast
2	chr6:54706800-54707400	Enhancers	NHEK	skin
3	chr6:54707000-54707200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:54707000-54707400	Enhancers	Placenta	Placenta
5	chr6:54707000-54707800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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