Variant report

Variant	rs6900427
Chromosome Location	chr6:12851560-12851561
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12850332..12852613-chr6:12857347..12858896,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13191496	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13194950	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13198167	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13205779	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13211722	1.00[CEU][hapmap]
rs13215145	1.00[CEU][hapmap]
rs13215271	1.00[CEU][hapmap]
rs13215290	1.00[CEU][hapmap]
rs13215300	1.00[CEU][hapmap]
rs16873462	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34348949	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35227817	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35395772	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35621699	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35954478	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36043593	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55637633	1.00[EUR][1000 genomes]
rs55803153	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62389889	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62389892	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62389893	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62389894	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62389900	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6912532	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6914233	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6914467	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6924353	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6927781	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6930661	1.00[CEU][hapmap]
rs7741088	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830587	chr6:12769661-12939875	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12848800-12851800	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr6:12848800-12852000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:12849200-12851600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:12849200-12851800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr6:12849200-12852000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:12849200-12852000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:12849400-12852000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:12849600-12851600	Enhancers	HSMM	muscle
9	chr6:12849800-12867000	Weak transcription	Brain Anterior Caudate	brain
10	chr6:12850400-12851800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:12850800-12851800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:12850800-12851800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:12851000-12851600	Enhancers	H1 Cell Line	embryonic stem cell

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