Variant report

Variant	rs6902225
Chromosome Location	chr6:133432323-133432324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10457002	0.84[EUR][1000 genomes]
rs10457600	0.90[EUR][1000 genomes]
rs10457602	1.00[CEU][hapmap]
rs10457603	1.00[CEU][hapmap]
rs11154715	0.87[EUR][1000 genomes]
rs12154207	0.87[EUR][1000 genomes]
rs12190728	0.86[EUR][1000 genomes]
rs12191026	0.87[EUR][1000 genomes]
rs12192002	0.87[EUR][1000 genomes]
rs12192605	0.87[EUR][1000 genomes]
rs12196069	0.86[EUR][1000 genomes]
rs12196492	0.87[EUR][1000 genomes]
rs12199138	0.90[EUR][1000 genomes]
rs12199555	0.87[EUR][1000 genomes]
rs12199958	0.87[EUR][1000 genomes]
rs12200393	0.87[EUR][1000 genomes]
rs12201315	1.00[CEU][hapmap]
rs12205139	0.83[EUR][1000 genomes]
rs12206291	0.86[EUR][1000 genomes]
rs12210216	0.87[EUR][1000 genomes]
rs12211999	0.87[EUR][1000 genomes]
rs12212715	0.82[EUR][1000 genomes]
rs12213350	0.90[EUR][1000 genomes]
rs12213452	0.90[EUR][1000 genomes]
rs12213690	0.87[EUR][1000 genomes]
rs12215217	0.90[EUR][1000 genomes]
rs28538690	0.85[EUR][1000 genomes]
rs4077767	0.82[EUR][1000 genomes]
rs4273707	0.86[EUR][1000 genomes]
rs4273708	0.86[EUR][1000 genomes]
rs57161827	0.87[EUR][1000 genomes]
rs58835706	0.82[EUR][1000 genomes]
rs59793266	0.87[EUR][1000 genomes]
rs62428563	0.89[EUR][1000 genomes]
rs62428596	0.87[EUR][1000 genomes]
rs62428597	0.85[EUR][1000 genomes]
rs62430562	0.83[EUR][1000 genomes]
rs62430580	0.80[EUR][1000 genomes]
rs62430582	0.82[EUR][1000 genomes]
rs62430588	0.86[EUR][1000 genomes]
rs62430590	0.86[EUR][1000 genomes]
rs6569863	0.81[CEU][hapmap]
rs6911954	0.84[EUR][1000 genomes]
rs6913444	0.91[EUR][1000 genomes]
rs6927627	0.86[EUR][1000 genomes]
rs6935070	0.86[EUR][1000 genomes]
rs6935480	0.86[EUR][1000 genomes]
rs6936410	0.86[EUR][1000 genomes]
rs6937029	0.85[EUR][1000 genomes]
rs6939899	0.83[EUR][1000 genomes]
rs6940959	0.86[EUR][1000 genomes]
rs72557636	0.84[EUR][1000 genomes]
rs7738156	0.86[EUR][1000 genomes]
rs7738592	0.86[EUR][1000 genomes]
rs7746390	0.87[EUR][1000 genomes]
rs7748926	0.87[EUR][1000 genomes]
rs7750218	0.89[EUR][1000 genomes]
rs7750279	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7750376	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7754486	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7756171	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs7756963	0.91[EUR][1000 genomes]
rs7761372	0.87[EUR][1000 genomes]
rs7767651	0.87[EUR][1000 genomes]
rs7770031	0.89[EUR][1000 genomes]
rs9321388	0.83[EUR][1000 genomes]
rs9321389	0.83[EUR][1000 genomes]
rs9483529	0.86[EUR][1000 genomes]
rs9483530	0.86[EUR][1000 genomes]
rs9483535	0.86[EUR][1000 genomes]
rs9483554	0.89[EUR][1000 genomes]
rs9493513	0.84[EUR][1000 genomes]
rs9493515	0.86[EUR][1000 genomes]
rs9493517	0.86[EUR][1000 genomes]
rs9493518	0.86[EUR][1000 genomes]
rs957183	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3445931	chr6:133347824-133434532	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv519475	chr6:133350936-133474673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6902225	HBS1L	cis	cerebellum	SCAN
rs6902225	HBS1L	cis	parietal	SCAN
rs6902225	VNN2	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133432200-133432400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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