Variant report

Variant	rs6903792
Chromosome Location	chr6:133655858-133655859
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1336522	0.84[AFR][1000 genomes]
rs2184784	0.81[AFR][1000 genomes]
rs6569877	0.97[AFR][1000 genomes]
rs6924629	0.97[AFR][1000 genomes]
rs6930942	0.97[AFR][1000 genomes]
rs9483575	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133643200-133658200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133654600-133660000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:133654600-133667800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:133655600-133658200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:133655600-133660000	Weak transcription	Psoas Muscle	Psoas
6	chr6:133655800-133657400	Weak transcription	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links