Variant report

Variant	rs6904870
Chromosome Location	chr6:130848510-130848511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1815602	0.94[ASN][1000 genomes]
rs1933758	0.86[EUR][1000 genomes]
rs1933772	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1933773	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6903831	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9375723	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9375727	0.94[ASN][1000 genomes]
rs9388799	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9402237	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9402238	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs946300	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9492633	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533971	chr6:130490694-131172051	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:130844600-130848600	Enhancers	Primary hematopoietic stem cells	blood
2	chr6:130844800-130848800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:130845600-130848800	Enhancers	Primary B cells from peripheral blood	blood
4	chr6:130845800-130848600	Enhancers	GM12878-XiMat	blood
5	chr6:130846000-130851000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:130846400-130848600	Enhancers	Dnd41	blood
7	chr6:130846600-130848800	Enhancers	Primary T cells from cord blood	blood
8	chr6:130846600-130849000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:130847200-130848800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:130847400-130848800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:130847600-130848800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:130847600-130851200	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:130847800-130848600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr6:130847800-130848800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:130848000-130848600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:130848000-130848800	Enhancers	NHEK	skin
17	chr6:130848400-130848600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:130848400-130851000	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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