Variant report

Variant	rs6904875
Chromosome Location	chr6:54662706-54662707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10456175	1.00[EUR][1000 genomes]
rs10948858	1.00[EUR][1000 genomes]
rs12190982	0.82[EUR][1000 genomes]
rs12195610	1.00[EUR][1000 genomes]
rs12196417	1.00[EUR][1000 genomes]
rs12197945	1.00[EUR][1000 genomes]
rs12198000	0.94[EUR][1000 genomes]
rs12198696	1.00[EUR][1000 genomes]
rs12199020	0.94[EUR][1000 genomes]
rs12203906	1.00[EUR][1000 genomes]
rs12203996	1.00[EUR][1000 genomes]
rs12204479	1.00[EUR][1000 genomes]
rs12205707	0.89[EUR][1000 genomes]
rs12209581	1.00[EUR][1000 genomes]
rs12210433	0.94[EUR][1000 genomes]
rs12211620	0.94[EUR][1000 genomes]
rs12215996	1.00[EUR][1000 genomes]
rs12216148	1.00[EUR][1000 genomes]
rs12216154	0.94[EUR][1000 genomes]
rs12216371	1.00[EUR][1000 genomes]
rs28819710	1.00[EUR][1000 genomes]
rs3913635	0.94[EUR][1000 genomes]
rs6915978	1.00[EUR][1000 genomes]
rs72955751	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72955777	1.00[EUR][1000 genomes]
rs72955781	1.00[EUR][1000 genomes]
rs72955782	1.00[EUR][1000 genomes]
rs72957543	0.85[EUR][1000 genomes]
rs72957545	1.00[EUR][1000 genomes]
rs72957569	1.00[EUR][1000 genomes]
rs72957574	1.00[EUR][1000 genomes]
rs72957593	0.83[EUR][1000 genomes]
rs72967427	0.94[EUR][1000 genomes]
rs72967428	0.88[EUR][1000 genomes]
rs7745529	1.00[EUR][1000 genomes]
rs7745648	1.00[EUR][1000 genomes]
rs7751328	0.89[EUR][1000 genomes]
rs9464136	0.94[EUR][1000 genomes]
rs9474995	0.89[EUR][1000 genomes]
rs9475003	0.94[EUR][1000 genomes]
rs9475012	1.00[EUR][1000 genomes]
rs9475015	0.88[EUR][1000 genomes]
rs9475016	0.88[EUR][1000 genomes]
rs9475022	1.00[EUR][1000 genomes]
rs9475023	1.00[EUR][1000 genomes]
rs9475025	1.00[EUR][1000 genomes]
rs9475028	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3473998	chr6:54662415-54666050	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
3	esv3473999	chr6:54662522-54665922	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
4	esv3474000	chr6:54662536-54665920	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv603129	chr6:54662538-54665574	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv10682	chr6:54662548-54665910	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54653200-54667800	Weak transcription	Placenta Amnion	Placenta Amnion

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