Variant report

Variant	rs6904902
Chromosome Location	chr6:56130746-56130747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12110798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925140	1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2147696	1.00[JPT][hapmap];0.80[YRI][hapmap];0.95[ASN][1000 genomes]
rs2397211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2894834	0.90[ASN][1000 genomes]
rs4602722	0.85[CEU][hapmap]
rs60407790	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62411896	0.95[ASN][1000 genomes]
rs6459141	0.95[ASN][1000 genomes]
rs6902532	0.95[ASN][1000 genomes]
rs6905216	0.95[ASN][1000 genomes]
rs6919257	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6920090	0.95[ASN][1000 genomes]
rs6923130	1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.95[ASN][1000 genomes]
rs6931235	0.85[ASN][1000 genomes]
rs6931381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7753541	0.95[ASN][1000 genomes]
rs7757732	0.95[ASN][1000 genomes]
rs7760380	1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9296835	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9296837	0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs9396200	0.85[CEU][hapmap]
rs9396201	0.85[CEU][hapmap]
rs9464368	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9464370	0.95[ASN][1000 genomes]
rs9475643	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9475645	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9475647	0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs9475649	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56130000-56131400	Enhancers	Rectal Smooth Muscle	rectum
2	chr6:56130000-56132000	Weak transcription	Fetal Stomach	stomach
3	chr6:56130000-56132200	Enhancers	Colon Smooth Muscle	Colon

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