Variant report

Variant	rs6905409
Chromosome Location	chr6:150506330-150506331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150495902..150498289-chr6:150504016..150506860,2	K562	blood:
2	chr6:150491837..150493416-chr6:150504605..150507001,2	K562	blood:
3	chr6:150505143..150508527-chr6:150511374..150514793,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12200795	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12202328	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12211587	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs1358727	0.88[MEX][hapmap]
rs2038774	0.84[MEX][hapmap]
rs4289668	0.84[MEX][hapmap]
rs910534	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs9384225	0.87[MEX][hapmap]
rs9397722	0.84[MEX][hapmap]
rs9479862	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6905409	VIP	cis	cerebellum	SCAN
rs6905409	MYCT1	cis	parietal	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150491400-150506400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:150497800-150511000	Weak transcription	NHEK	skin
3	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:150500000-150508000	Enhancers	Fetal Heart	heart
5	chr6:150502000-150506400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:150502000-150506400	Weak transcription	Esophagus	oesophagus
7	chr6:150502000-150506400	Weak transcription	HMEC	breast
8	chr6:150502400-150511800	Weak transcription	Right Atrium	heart
9	chr6:150503400-150507400	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:150503600-150507600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr6:150503600-150507800	Enhancers	Primary B cells from cord blood	blood
12	chr6:150504200-150510600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:150504600-150507800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:150504800-150508000	Enhancers	Duodenum Mucosa	Duodenum
15	chr6:150505000-150506600	Enhancers	GM12878-XiMat	blood
16	chr6:150505200-150506600	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr6:150505400-150506600	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr6:150505400-150507400	Weak transcription	Colonic Mucosa	Colon
19	chr6:150505400-150508400	Enhancers	K562	blood
20	chr6:150505600-150506400	Weak transcription	Lung	lung
21	chr6:150505600-150506600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr6:150505600-150507600	Enhancers	Fetal Intestine Small	intestine
23	chr6:150505600-150510400	Weak transcription	Right Ventricle	heart
24	chr6:150505800-150506800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:150506000-150506600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr6:150506000-150507400	Enhancers	Fetal Intestine Large	intestine
27	chr6:150506200-150506400	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr6:150506200-150506600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:150506200-150507200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:150506200-150507400	Enhancers	Left Ventricle	heart
31	chr6:150506200-150507800	Enhancers	Sigmoid Colon	Sigmoid Colon

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