Variant report

Variant	rs6906017
Chromosome Location	chr6:12953303-12953304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12944669..12946335-chr6:12951774..12953726,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10948372	0.94[EUR][1000 genomes]
rs11755825	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11756003	0.90[EUR][1000 genomes]
rs13194360	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34175679	0.92[EUR][1000 genomes]
rs35266083	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36049381	0.90[EUR][1000 genomes]
rs4236093	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4588689	0.91[EUR][1000 genomes]
rs62386820	0.91[EUR][1000 genomes]
rs62386821	0.90[EUR][1000 genomes]
rs66820937	0.90[EUR][1000 genomes]
rs6906890	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6929107	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7775710	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9473086	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830588	chr6:12793530-12972493	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv5202	chr6:12916229-12958517	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12945600-12954600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:12945600-12957000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:12950600-12957000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:12950800-12956800	Weak transcription	Primary B cells from cord blood	blood
5	chr6:12951000-12953400	Enhancers	Fetal Stomach	stomach
6	chr6:12951000-12953800	Enhancers	Fetal Heart	heart
7	chr6:12951800-12953400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:12951800-12953400	Enhancers	Brain Anterior Caudate	brain
9	chr6:12951800-12953400	Enhancers	Brain Cingulate Gyrus	brain
10	chr6:12952000-12956800	Weak transcription	Right Ventricle	heart
11	chr6:12952000-12957400	Weak transcription	Left Ventricle	heart
12	chr6:12952400-12953400	Enhancers	Fetal Brain Male	brain
13	chr6:12952600-12954600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:12952600-12956200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:12952600-12956800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:12952600-12957000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:12952800-12957000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:12953000-12956600	Weak transcription	Fetal Brain Female	brain
19	chr6:12953000-12957400	Weak transcription	Brain Angular Gyrus	brain
20	chr6:12953000-12957400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:12953200-12956400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:12953200-12956600	Weak transcription	Brain Germinal Matrix	brain
23	chr6:12953200-12956600	Weak transcription	Brain Substantia Nigra	brain
24	chr6:12953200-12957000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:12953200-12957000	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:12953200-12957400	Weak transcription	Colon Smooth Muscle	Colon

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