Variant report

Variant	rs6907169
Chromosome Location	chr6:100905226-100905227
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17060629	0.84[YRI][hapmap]
rs17060639	1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs241814	0.83[YRI][hapmap]
rs3798484	0.85[YRI][hapmap]
rs3798486	0.95[EUR][1000 genomes]
rs3811076	0.91[EUR][1000 genomes]
rs58927095	0.86[AFR][1000 genomes]
rs6928357	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6942018	0.81[YRI][hapmap];0.86[AFR][1000 genomes]
rs7755091	0.92[YRI][hapmap];0.91[AFR][1000 genomes]
rs9322060	0.84[AFR][1000 genomes]
rs9485075	0.92[YRI][hapmap];0.91[AFR][1000 genomes]
rs9497479	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1023710	chr6:100810738-101001115	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv538388	chr6:100810738-101001115	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv515895	chr6:100868779-100910798	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv533053	chr6:100883636-100911512	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100897400-100908600	Weak transcription	HSMMtube	muscle
2	chr6:100898000-100906000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:100901600-100906800	ZNF genes & repeats	Spleen	Spleen
4	chr6:100901600-100907200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:100901800-100907600	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr6:100902000-100913600	Active TSS	Psoas Muscle	Psoas
7	chr6:100903200-100906000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:100904200-100905400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:100904400-100905400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
10	chr6:100904600-100905400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
11	chr6:100904600-100905600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
12	chr6:100904600-100905600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:100904600-100905800	Bivalent/Poised TSS	Fetal Kidney	kidney
14	chr6:100904800-100905400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
15	chr6:100905000-100905800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:100905000-100906000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:100905000-100906000	Enhancers	Pancreas	Pancrea
18	chr6:100905200-100905400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
19	chr6:100905200-100905400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
20	chr6:100905200-100905600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr6:100905200-100905600	Bivalent Enhancer	Fetal Muscle Leg	muscle
22	chr6:100905200-100905800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
23	chr6:100905200-100905800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:100905200-100905800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:100905200-100905800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
26	chr6:100905200-100906600	Bivalent Enhancer	Liver	Liver
27	chr6:100905200-100906800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
28	chr6:100905200-100906800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
29	chr6:100905200-100906800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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