Variant report

Variant	rs6907224
Chromosome Location	chr6:150516936-150516937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150512430..150514564-chr6:150515573..150518401,3	K562	blood:
2	chr6:150510588..150515411-chr6:150515857..150521257,7	MCF-7	breast:
3	chr6:150515558..150517711-chr6:150540869..150542397,2	K562	blood:
4	chr6:150514870..150517111-chr6:150523756..150525398,2	MCF-7	breast:
5	chr6:150512430..150515646-chr6:150516901..150519316,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10457859	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12191405	0.95[EUR][1000 genomes]
rs12201610	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12202328	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12211097	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12211587	0.90[EUR][1000 genomes]
rs59114788	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs746984	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9478557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9479904	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9479919	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:150508400-150517000	Weak transcription	K562	blood
3	chr6:150510600-150518000	Weak transcription	Psoas Muscle	Psoas
4	chr6:150513600-150517200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:150513800-150517000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:150513800-150517000	Weak transcription	NHEK	skin
7	chr6:150514000-150517000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:150514000-150517000	Weak transcription	HMEC	breast
9	chr6:150514200-150517000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:150514800-150517000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:150514800-150524000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:150515000-150517000	Weak transcription	Right Ventricle	heart
13	chr6:150515000-150517800	Weak transcription	Fetal Brain Female	brain
14	chr6:150515200-150518200	Weak transcription	Right Atrium	heart
15	chr6:150515400-150519600	Weak transcription	Fetal Brain Male	brain
16	chr6:150516000-150517000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:150516000-150517800	Enhancers	Fetal Heart	heart
18	chr6:150516200-150517000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr6:150516400-150517600	Enhancers	Left Ventricle	heart
20	chr6:150516400-150518400	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr6:150516400-150519000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr6:150516600-150518200	Enhancers	Fetal Kidney	kidney
23	chr6:150516800-150517000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:150516800-150517000	Weak transcription	Lung	lung
25	chr6:150516800-150517200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:150516800-150517400	Enhancers	Primary hematopoietic stem cells	blood
27	chr6:150516800-150518000	Enhancers	Primary B cells from cord blood	blood
28	chr6:150516800-150518800	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr6:150516800-150518800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr6:150516800-150518800	Enhancers	Fetal Intestine Large	intestine
31	chr6:150516800-150518800	Enhancers	Fetal Intestine Small	intestine
32	chr6:150516800-150518800	Enhancers	Fetal Muscle Leg	muscle

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