Variant report

Variant	rs6907388
Chromosome Location	chr6:13139616-13139617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10485363	0.86[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755663	0.93[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966433	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs1223532	0.80[EUR][1000 genomes]
rs1223535	0.81[CEU][hapmap]
rs13192887	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13201878	1.00[JPT][hapmap]
rs13220463	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873638	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs17323391	0.93[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2183072	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327633	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34603187	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4131857	1.00[JPT][hapmap]
rs4329096	0.80[CEU][hapmap]
rs4331981	1.00[JPT][hapmap]
rs4715065	0.81[CEU][hapmap]
rs62385529	0.81[EUR][1000 genomes]
rs6939931	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71562464	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746593	0.80[CEU][hapmap]
rs7762786	0.81[CEU][hapmap]
rs7775901	1.00[JPT][hapmap]
rs9473086	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13132800-13153000	Weak transcription	Aorta	Aorta
2	chr6:13137000-13141200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:13138600-13143200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:13138800-13143800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:13138800-13144400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:13139000-13141400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:13139200-13139800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:13139400-13140000	Enhancers	HSMM	muscle
9	chr6:13139400-13141400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:13139400-13142400	Enhancers	Brain Anterior Caudate	brain
11	chr6:13139600-13140200	Enhancers	Primary hematopoietic stem cells	blood

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