Variant report

Variant	rs6908648
Chromosome Location	chr6:101097015-101097016
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:101090896..101093112-chr6:101096818..101099684,2	K562	blood:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10485138	1.00[EUR][1000 genomes]
rs10485139	1.00[EUR][1000 genomes]
rs12183204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12660722	1.00[EUR][1000 genomes]
rs12661291	1.00[EUR][1000 genomes]
rs12664256	1.00[EUR][1000 genomes]
rs12664950	1.00[EUR][1000 genomes]
rs12665693	1.00[EUR][1000 genomes]
rs1336240	0.83[ASN][1000 genomes]
rs1336247	0.83[ASN][1000 genomes]
rs1336248	0.83[ASN][1000 genomes]
rs1336249	0.83[ASN][1000 genomes]
rs1472299	0.83[ASN][1000 genomes]
rs1577618	0.83[ASN][1000 genomes]
rs17060858	1.00[EUR][1000 genomes]
rs17060862	1.00[EUR][1000 genomes]
rs17060869	1.00[EUR][1000 genomes]
rs17060914	1.00[EUR][1000 genomes]
rs17060954	1.00[EUR][1000 genomes]
rs1889888	0.83[ASN][1000 genomes]
rs2172843	0.83[ASN][1000 genomes]
rs2295604	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3736784	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3736785	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41285889	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41288407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41288409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41288411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4839788	0.83[ASN][1000 genomes]
rs4840143	0.83[ASN][1000 genomes]
rs4840145	0.83[ASN][1000 genomes]
rs4840146	0.83[ASN][1000 genomes]
rs4840149	0.83[ASN][1000 genomes]
rs4840152	0.83[ASN][1000 genomes]
rs61746540	1.00[AMR][1000 genomes]
rs62422696	0.83[ASN][1000 genomes]
rs6570783	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs6899507	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6902414	0.83[ASN][1000 genomes]
rs6903429	1.00[AMR][1000 genomes]
rs6908453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6925086	0.83[ASN][1000 genomes]
rs6927531	1.00[AMR][1000 genomes]
rs6928584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932921	0.83[ASN][1000 genomes]
rs6939613	0.83[ASN][1000 genomes]
rs7741877	0.83[ASN][1000 genomes]
rs7747613	1.00[EUR][1000 genomes]
rs7751872	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7753015	1.00[EUR][1000 genomes]
rs7755630	0.94[AFR][1000 genomes]
rs7756019	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7757823	0.83[ASN][1000 genomes]
rs7764514	0.83[ASN][1000 genomes]
rs7765469	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7767971	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7770430	0.83[ASN][1000 genomes]
rs7772262	1.00[EUR][1000 genomes]
rs7773317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9322169	0.83[ASN][1000 genomes]
rs9373587	0.83[ASN][1000 genomes]
rs9377215	0.83[ASN][1000 genomes]
rs9390683	0.83[ASN][1000 genomes]
rs9399681	0.83[ASN][1000 genomes]
rs9399691	0.83[ASN][1000 genomes]
rs9404014	0.83[ASN][1000 genomes]
rs9498396	0.81[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028016	chr6:101001055-101158822	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv886445	chr6:101004751-101240763	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886448	chr6:101018032-101123503	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886449	chr6:101018032-101147095	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv886450	chr6:101018032-101168137	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv886451	chr6:101018032-101172328	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv886452	chr6:101018032-101192051	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv886453	chr6:101018032-101203051	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv470848	chr6:101036713-101102584	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv463988	chr6:101036713-101158950	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv604266	chr6:101036713-101158950	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv1840320	chr6:101039215-101102585	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv886454	chr6:101049108-101123503	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv886455	chr6:101049108-101203051	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv886456	chr6:101049108-101277926	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv463990	chr6:101058886-101123503	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv604269	chr6:101058886-101123503	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv604270	chr6:101058886-101196080	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv604271	chr6:101072307-101158950	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	nsv463991	chr6:101072307-101196080	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	nsv604272	chr6:101072307-101196080	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	nsv463992	chr6:101072307-101197953	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	nsv604273	chr6:101072307-101197953	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	nsv604274	chr6:101078718-101196080	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
26	nsv1027288	chr6:101091434-101121237	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv1032826	chr6:101091434-101147095	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv1028583	chr6:101091434-101152631	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv1015465	chr6:101091434-101157493	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv1031817	chr6:101091995-101157493	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101025800-101099800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:101032400-101102000	Weak transcription	Thymus	Thymus
3	chr6:101032400-101104400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:101032600-101102000	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:101032600-101110400	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:101037400-101110600	Weak transcription	K562	blood
7	chr6:101037800-101107200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:101062600-101101600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:101063800-101102600	Weak transcription	Small Intestine	intestine
10	chr6:101067600-101102200	Weak transcription	Right Ventricle	heart
11	chr6:101068400-101106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:101070400-101100000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:101071600-101104600	Weak transcription	Brain Angular Gyrus	brain
14	chr6:101071600-101127800	Weak transcription	Hela-S3	cervix
15	chr6:101071800-101099200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:101075600-101100000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:101076400-101107200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:101076400-101110400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:101081200-101106000	Weak transcription	Fetal Brain Male	brain
20	chr6:101081400-101099200	Weak transcription	NHEK	skin
21	chr6:101081400-101100000	Weak transcription	HepG2	liver
22	chr6:101081600-101110800	Weak transcription	HSMMtube	muscle
23	chr6:101081800-101102600	Weak transcription	A549	lung
24	chr6:101082000-101102400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:101083200-101097200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:101083800-101101000	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr6:101084800-101099200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr6:101085400-101101200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:101085400-101102200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr6:101085800-101111000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:101086000-101104800	Weak transcription	Fetal Lung	lung
32	chr6:101086000-101105800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr6:101086800-101101400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr6:101086800-101101400	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:101086800-101111000	Weak transcription	NHLF	lung
36	chr6:101087000-101101600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:101087200-101110800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:101087400-101099800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr6:101088400-101097200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:101089000-101100800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:101089200-101104200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:101089800-101104000	Strong transcription	Dnd41	blood
43	chr6:101090400-101100800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:101091600-101100000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr6:101091800-101100000	Weak transcription	Brain Anterior Caudate	brain
46	chr6:101091800-101102600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:101091800-101105200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr6:101092400-101098200	Weak transcription	HMEC	breast
49	chr6:101092800-101099000	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr6:101092800-101099800	Weak transcription	Primary hematopoietic stem cells	blood

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